Review of processing and analysis methods for DNA methylation array data von Wilhelm-Benartzi, C S, Koestler, D C, Karagas, M R, Flanagan, J M, Christensen, B C, Kelsey, K T, Marsit, C J, Houseman, E A, Brown, R

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Perturbation of BRMS1 interactome reveals pathways that impact metastasis von Zimmermann, Rosalyn C, Sardiu, Mihaela E, Manton, Christa A, Miah, Md Sayem, Banks, Charles A S, Adams, Mark K, Koestler, Devin C, Hurst, Douglas R, Edmonds, Mick D, Washburn, Michael P, Welch, Danny R

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DNA Methylation Array Analysis Identifies Profiles of Blood-Derived DNA Methylation Associated With Bladder Cancer von MARSIT, Carmen J, KOESTLER, Devin C, CHRISTENSEN, Brock C, KARAGAS, Margaret R, HOUSEMAN, E. Andres, KELSEY, Karl T

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Peripheral Blood Immune Cell Methylation Profiles Are Associated with Nonhematopoietic Cancers von KOESTLER, Devin C, MARSIT, Carmen J, CHRISTENSEN, Brock C, ACCOMANDO, William, LANGEVIN, Scott M, HOUSEMAN, E. Andres, NELSON, Heather H, KARAGAS, Margaret R, WIENCKE, John K, KELSEY, Karl T

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Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments von Thompson, Jeffrey A, Koestler, Devin C

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DNA methylation arrays as surrogate measures of cell mixture distribution von Houseman, Eugene Andres, Accomando, William P, Koestler, Devin C, Christensen, Brock C, Marsit, Carmen J, Nelson, Heather H, Wiencke, John K, Kelsey, Karl T

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An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray von Salas, Lucas A, Koestler, Devin C, Butler, Rondi A, Hansen, Helen M, Wiencke, John K, Kelsey, Karl T, Christensen, Brock C

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Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling von Salas, Lucas A., Zhang, Ze, Koestler, Devin C., Butler, Rondi A., Hansen, Helen M., Molinaro, Annette M., Wiencke, John K., Kelsey, Karl T., Christensen, Brock C.

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The Microbiomes of Pancreatic and Duodenum Tissue Overlap and Are Highly Subject Specific but Differ between Pancreatic Cancer and Noncancer Subjects von Del Castillo, Erika, Meier, Richard, Chung, Mei, Koestler, Devin C, Chen, Tsute, Paster, Bruce J, Charpentier, Kevin P, Kelsey, Karl T, Izard, Jacques, Michaud, Dominique S

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pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS) von Graw, Stefan, Henn, Rosalyn, Thompson, Jeffrey A, Koestler, Devin C

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Simulating time-to-event data under the Cox proportional hazards model: assessing the performance of the non-parametric Flexible Hazards Method von Delzeit, Jennifer L., Koestler, Devin C.

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DNA methylation profiles delineate etiologic heterogeneity and clinically important subgroups of bladder cancer von Wilhelm-Benartzi, C.S., Koestler, D.C., Houseman, E.A., Christensen, B.C., Wiencke, John K., Schned, A.R., Karagas, M.R., Kelsey, K.T., Marsit, C.J.

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Low variability in the underlying cellular landscape adversely affects the performance of interaction-based approaches for conducting cell-specific analyses of DNA methylation in b... von Meier, Richard, Nissen, Emily, Koestler, Devin C.

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Sustained O-GlcNAcylation reprograms mitochondrial function to regulate energy metabolism von Tan, Ee Phie, McGreal, Steven R., Graw, Stefan, Tessman, Robert, Koppel, Scott J., Dhakal, Pramod, Zhang, Zhen, Machacek, Miranda, Zachara, Natasha E., Koestler, Devin C., Peterson, Kenneth R., Thyfault, John P., Swerdlow, Russell H., Krishnamurthy, Partha, DiTacchio, Luciano, Apte, Udayan, Slawson, Chad

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Mitochondrial Genomic Backgrounds Affect Nuclear DNA Methylation and Gene Expression von Vivian, Carolyn J, Brinker, Amanda E, Graw, Stefan, Koestler, Devin C, Legendre, Christophe, Gooden, Gerald C, Salhia, Bodour, Welch, Danny R

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Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data von Gervin, Kristina, Salas, Lucas A, Bakulski, Kelly M, van Zelm, Menno C, Koestler, Devin C, Wiencke, John K, Duijts, Liesbeth, Moll, Henriëtte A, Kelsey, Karl T, Kobor, Michael S, Lyle, Robert, Christensen, Brock C, Felix, Janine F, Jones, Meaghan J

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HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylati... von Zhang, Ze, Wiencke, John K, Kelsey, Karl T, Koestler, Devin C, Christensen, Brock C, Salas, Lucas A

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Placental FKBP5 genetic and epigenetic variation is associated with infant neurobehavioral outcomes in the RICHS cohort von Paquette, Alison G, Lester, Barry M, Koestler, Devin C, Lesseur, Corina, Armstrong, David A, Marsit, Carmen J

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Synergistic anti-proliferative activity of JQ1 and GSK2801 in triple-negative breast cancer von Yellapu, Nanda Kumar, Ly, Thuc, Sardiu, Mihaela E, Pei, Dong, Welch, Danny R, Thompson, Jeffery A, Koestler, Devin C

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Licofelone Enhances the Efficacy of Paclitaxel in Ovarian Cancer by Reversing Drug Resistance and Tumor Stem-like Properties von Hirst, Jeff, Pathak, Harsh B, Hyter, Stephen, Pessetto, Ziyan Y, Ly, Thuc, Graw, Stefan, Koestler, Devin C, Krieg, Adam J, Roby, Katherine F, Godwin, Andrew K

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