Cell2location maps fine-grained cell types in spatial transcriptomics von Kleshchevnikov, Vitalii, Shmatko, Artem, Dann, Emma, Aivazidis, Alexander, King, Hamish W., Li, Tong, Elmentaite, Rasa, Lomakin, Artem, Kedlian, Veronika, Gayoso, Adam, Jain, Mika Sarkin, Park, Jun Sung, Ramona, Lauma, Tuck, Elizabeth, Arutyunyan, Anna, Vento-Tormo, Roser, Gerstung, Moritz, James, Louisa, Stegle, Oliver, Bayraktar, Omer Ali

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Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map von Bayraktar, Omer Ali, Bartels, Theresa, Holmqvist, Staffan, Kleshchevnikov, Vitalii, Martirosyan, Araks, Polioudakis, Damon, Ben Haim, Lucile, Young, Adam M. H., Batiuk, Mykhailo Y., Prakash, Kirti, Brown, Alexander, Roberts, Kenny, Paredes, Mercedes F., Kawaguchi, Riki, Stockley, John H., Sabeur, Khalida, Chang, Sandra M., Huang, Eric, Hutchinson, Peter, Ullian, Erik M., Hemberg, Martin, Coppola, Giovanni, Holt, Matthew G., Geschwind, Daniel H., Rowitch, David H.

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Predicting the mutations generated by repair of Cas9-induced double-strand breaks von Allen, Felicity, Crepaldi, Luca, Alsinet, Clara, Strong, Alexander J., Kleshchevnikov, Vitalii, De Angeli, Pietro, Páleníková, Petra, Khodak, Anton, Kiselev, Vladimir, Kosicki, Michael, Bassett, Andrew R., Harding, Heather, Galanty, Yaron, Muñoz-Martínez, Francisco, Metzakopian, Emmanouil, Jackson, Stephen P., Parts, Leopold

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Mapping the developing human immune system across organs von Suo, Chenqu, Dann, Emma, Goh, Issac, Jardine, Laura, Kleshchevnikov, Vitalii, Park, Jong-Eun, Botting, Rachel A, Stephenson, Emily, Engelbert, Justin, Tuong, Zewen Kelvin, Polanski, Krzysztof, Yayon, Nadav, Xu, Chuan, Suchanek, Ondrej, Elmentaite, Rasa, Domínguez Conde, Cecilia, He, Peng, Pritchard, Sophie, Miah, Mohi, Moldovan, Corina, Steemers, Alexander S, Mazin, Pavel, Prete, Martin, Horsfall, Dave, Marioni, John C, Clatworthy, Menna R, Haniffa, Muzlifah, Teichmann, Sarah A

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Spatial genomics maps the structure, nature and evolution of cancer clones von Lomakin, Artem, Svedlund, Jessica, Strell, Carina, Gataric, Milana, Shmatko, Artem, Rukhovich, Gleb, Park, Jun Sung, Ju, Young Seok, Dentro, Stefan, Kleshchevnikov, Vitalii, Vaskivskyi, Vasyl, Li, Tong, Bayraktar, Omer Ali, Pinder, Sarah, Richardson, Andrea L., Santagata, Sandro, Campbell, Peter J., Russnes, Hege, Gerstung, Moritz, Nilsson, Mats, Yates, Lucy R.

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Use of viral motif mimicry improves the proteome-wide discovery of human linear motifs von Wadie, Bishoy, Kleshchevnikov, Vitalii, Sandaltzopoulou, Elissavet, Benz, Caroline, Petsalaki, Evangelia

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Probabilistic models to resolve cell identity and tissue architecture von Kleshchevnikov, Vitalii

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Cells of the human intestinal tract mapped across space and time von Elmentaite, Rasa, Kumasaka, Natsuhiko, Roberts, Kenny, Fleming, Aaron, Dann, Emma, King, Hamish W., Kleshchevnikov, Vitalii, Dabrowska, Monika, Pritchard, Sophie, Bolt, Liam, Vieira, Sara F., Mamanova, Lira, Huang, Ni, Perrone, Francesca, Goh Kai’En, Issac, Lisgo, Steven N., Katan, Matilda, Leonard, Steven, Oliver, Thomas R. W., Hook, C. Elizabeth, Nayak, Komal, Campos, Lia S., Domínguez Conde, Cecilia, Stephenson, Emily, Engelbert, Justin, Botting, Rachel A., Polanski, Krzysztof, van Dongen, Stijn, Patel, Minal, Morgan, Michael D., Marioni, John C., Bayraktar, Omer Ali, Meyer, Kerstin B., He, Xiaoling, Barker, Roger A., Uhlig, Holm H., Mahbubani, Krishnaa T., Saeb-Parsy, Kourosh, Zilbauer, Matthias, Clatworthy, Menna R., Haniffa, Muzlifah, James, Kylie R., Teichmann, Sarah A.

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A spatially resolved atlas of the human lung characterizes a gland-associated immune niche von Madissoon, Elo, Oliver, Amanda J., Kleshchevnikov, Vitalii, Wilbrey-Clark, Anna, Polanski, Krzysztof, Richoz, Nathan, Ribeiro Orsi, Ana, Mamanova, Lira, Bolt, Liam, Elmentaite, Rasa, Pett, J. Patrick, Huang, Ni, Xu, Chuan, He, Peng, Dabrowska, Monika, Pritchard, Sophie, Tuck, Liz, Prigmore, Elena, Perera, Shani, Knights, Andrew, Oszlanczi, Agnes, Hunter, Adam, Vieira, Sara F., Patel, Minal, Lindeboom, Rik G. H., Campos, Lia S., Matsuo, Kazuhiko, Nakayama, Takashi, Yoshida, Masahiro, Worlock, Kaylee B., Nikolić, Marko Z., Georgakopoulos, Nikitas, Mahbubani, Krishnaa T., Saeb-Parsy, Kourosh, Bayraktar, Omer Ali, Clatworthy, Menna R., Stegle, Oliver, Kumasaka, Natsuhiko, Teichmann, Sarah A., Meyer, Kerstin B.

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A human embryonic limb cell atlas resolved in space and time von Zhang, Bao, He, Peng, Lawrence, John E. G., Wang, Shuaiyu, Tuck, Elizabeth, Williams, Brian A., Roberts, Kenny, Kleshchevnikov, Vitalii, Mamanova, Lira, Bolt, Liam, Polanski, Krzysztof, Li, Tong, Elmentaite, Rasa, Fasouli, Eirini S., Prete, Martin, He, Xiaoling, Yayon, Nadav, Fu, Yixi, Yang, Hao, Liang, Chen, Zhang, Hui, Blain, Raphael, Chedotal, Alain, FitzPatrick, David R., Firth, Helen, Dean, Andrew, Bayraktar, Omer Ali, Marioni, John C., Barker, Roger A., Storer, Mekayla A., Wold, Barbara J., Zhang, Hongbo, Teichmann, Sarah A.

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A spatial human thymus cell atlas mapped to a continuous tissue axis von Yayon, Nadav, Kedlian, Veronika R., Boehme, Lena, Suo, Chenqu, Wachter, Brianna T., Beuschel, Rebecca T., Amsalem, Oren, Polanski, Krzysztof, Koplev, Simon, Tuck, Elizabeth, Dann, Emma, Van Hulle, Jolien, Perera, Shani, Putteman, Tom, Predeus, Alexander V., Dabrowska, Monika, Richardson, Laura, Tudor, Catherine, Kreins, Alexandra Y., Engelbert, Justin, Stephenson, Emily, Kleshchevnikov, Vitalii, De Rita, Fabrizio, Crossland, David, Bosticardo, Marita, Pala, Francesca, Prigmore, Elena, Chipampe, Nana-Jane, Prete, Martin, Fei, Lijiang, To, Ken, Barker, Roger A., He, Xiaoling, Van Nieuwerburgh, Filip, Bayraktar, Omer Ali, Patel, Minal, Davies, E Graham, Haniffa, Muzlifah A., Uhlmann, Virginie, Notarangelo, Luigi D., Germain, Ronald N., Radtke, Andrea J., Marioni, John C., Taghon, Tom, Teichmann, Sarah A.

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Author Correction: Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro von Garcia-Alonso, Luz, Handfield, Louis-François, Roberts, Kenny, Nikolakopoulou, Konstantina, Fernando, Ridma C., Gardner, Lucy, Woodhams, Benjamin, Arutyunyan, Anna, Polanski, Krzysztof, Hoo, Regina, Sancho-Serra, Carmen, Li, Tong, Kwakwa, Kwasi, Tuck, Elizabeth, Lorenzi, Valentina, Massalha, Hassan, Prete, Martin, Kleshchevnikov, Vitalii, Tarkowska, Aleksandra, Porter, Tarryn, Mazzeo, Cecilia Icoresi, van Dongen, Stijn, Dabrowska, Monika, Vaskivskyi, Vasyl, Mahbubani, Krishnaa T., Park, Jong-eun, Jimenez-Linan, Mercedes, Campos, Lia, Kiselev, Vladimir Yu, Lindskog, Cecilia, Ayuk, Paul, Prigmore, Elena, Stratton, Michael R., Saeb-Parsy, Kourosh, Moffett, Ashley, Moore, Luiza, Bayraktar, Omer A., Teichmann, Sarah A., Turco, Margherita Y., Vento-Tormo, Roser

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Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro von Garcia-Alonso, Luz, Handfield, Louis-François, Roberts, Kenny, Nikolakopoulou, Konstantina, Fernando, Ridma C, Gardner, Lucy, Woodhams, Benjamin, Arutyunyan, Anna, Polanski, Krzysztof, Hoo, Regina, Sancho-Serra, Carmen, Li, Tong, Kwakwa, Kwasi, Tuck, Elizabeth, Lorenzi, Valentina, Massalha, Hassan, Prete, Martin, Kleshchevnikov, Vitalii, Tarkowska, Aleksandra, Porter, Tarryn, Mazzeo, Cecilia Icoresi, van Dongen, Stijn, Dabrowska, Monika, Vaskivskyi, Vasyl, Mahbubani, Krishnaa T, Park, Jong-eun, Jimenez-Linan, Mercedes, Campos, Lia, Kiselev, Vladimir Yu, Lindskog, Cecilia, Ayuk, Paul, Prigmore, Elena, Stratton, Michael R, Saeb-Parsy, Kourosh, Moffett, Ashley, Moore, Luiza, Bayraktar, Omer A, Teichmann, Sarah A, Turco, Margherita Y, Vento-Tormo, Roser

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Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map von Bayraktar, Omer Ali, Bartels, Theresa, Holmqvist, Staffan, Kleshchevnikov, Vitalii, Martirosyan, Araks, Polioudakis, Damon, Ben Haim, Lucile, Young, Adam M.H, Batiuk, Mykhailo Y, Prakash, Kirti, Brown, Alexander, Roberts, Kenny, Paredes, Mercedes F, Kawaguchi, Riki, Stockley, John H, Sabeur, Khalida, Chang, Sandra M, Huang, Eric, Hutchinson, Peter, Ullian, Erik M, Hemberg, Martin, Coppola, Giovanni, Holt, Matthew G, Geschwind, Daniel H, Rowitch, David H

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Human skeletal muscle aging atlas von Kedlian, Veronika R, Wang, Yaning, Liu, Tianliang, Chen, Xiaoping, Bolt, Liam, Tudor, Catherine, Shen, Zhuojian, Fasouli, Eirini S, Prigmore, Elena, Kleshchevnikov, Vitalii, Pett, Jan Patrick, Li, Tong, Lawrence, John E G, Perera, Shani, Prete, Martin, Huang, Ni, Guo, Qin, Zeng, Xinrui, Yang, Lu, Polański, Krzysztof, Chipampe, Nana-Jane, Dabrowska, Monika, Li, Xiaobo, Bayraktar, Omer Ali, Patel, Minal, Kumasaka, Natsuhiko, Mahbubani, Krishnaa T, Xiang, Andy Peng, Meyer, Kerstin B, Saeb-Parsy, Kourosh, Teichmann, Sarah A, Zhang, Hongbo

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Use of viral motif mimicry improves the proteome-wide discovery of human linear motifs von Wadie, Bishoy, Kleshchevnikov, Vitalii, Sandaltzopoulou, Elissavet, Benz, Caroline, Petsalaki, Evangelia

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Human skeletal muscle aging atlas von Kedlian, Veronika R, Wang, Yaning, Liu, Tianliang, Chen, Xiaoping, Bolt, Liam, Tudor, Catherine, Shen, Zhuojian, Fasouli, Eirini S, Prigmore, Elena, Kleshchevnikov, Vitalii, Pett, Jan Patrick, Li, Tong, Lawrence, John EG, Perera, Shani, Prete, Martin, Huang, Ni, Guo, Qin, Zeng, Xinrui, Yang, Lu, Polański, Krzysztof, Chipampe, Nana-Jane, Dabrowska, Monika, Li, Xiaobo, Bayraktar, Omer Ali, Patel, Minal, Kumasaka, Natsuhiko, Mahbubani, Krishnaa T, Xiang, Andy Peng, Meyer, Kerstin B, Saeb-Parsy, Kourosh, Teichmann, Sarah A, Zhang, Hongbo

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A human embryonic limb cell atlas resolved in space and time von Zhang, Bao, He, Peng, Lawrence, John EG, Wang, Shuaiyu, Tuck, Elizabeth, Williams, Brian A, Roberts, Kenny, Kleshchevnikov, Vitalii, Mamanova, Lira, Bolt, Liam, Polanski, Krzysztof, Li, Tong, Elmentaite, Rasa, Fasouli, Eirini S, Prete, Martin, He, Xiaoling, Yayon, Nadav, Fu, Yixi, Yang, Hao, Liang, Chen, Zhang, Hui, Blain, Raphael, Chedotal, Alain, FitzPatrick, David R, Firth, Helen, Dean, Andrew, Bayraktar, Omer Ali, Marioni, John C, Barker, Roger A, Storer, Mekayla A, Wold, Barbara J, Zhang, Hongbo, Teichmann, Sarah A

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Mapping the developing human immune system across organs von Suo, Chenqu, Dann, Emma, Goh, Issac, Jardine, Laura, Kleshchevnikov, Vitalii, Park, Jong-Eun, Botting, Rachel A, Stephenson, Emily, Engelbert, Justin, Tuong, Zewen Kelvin, Polanski, Krzysztof, Yayon, Nadav, Xu, Chuan, Suchanek, Ondrej, Elmentaite, Rasa, Domínguez Conde, Cecilia, He, Peng, Pritchard, Sophie, Miah, Mohi, Moldovan, Corina, Steemers, Alexander S, Mazin, Pavel, Prete, Martin, Horsfall, Dave, Marioni, John C, Clatworthy, Menna R, Haniffa, Muzlifah, Teichmann, Sarah A

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A spatially resolved atlas of the human lung characterizes a gland-associated immune niche von Madissoon, Elo, Oliver, Amanda J, Kleshchevnikov, Vitalii, Wilbrey-Clark, Anna, Polanski, Krzysztof, Richoz, Nathan, Ribeiro Orsi, Ana, Mamanova, Lira, Bolt, Liam, Elmentaite, Rasa, Pett, J Patrick, Huang, Ni, Xu, Chuan, He, Peng, Dabrowska, Monika, Pritchard, Sophie, Tuck, Liz, Prigmore, Elena, Perera, Shani, Knights, Andrew, Oszlanczi, Agnes, Hunter, Adam, Vieira, Sara F, Patel, Minal, Lindeboom, Rik GH, Campos, Lia S, Matsuo, Kazuhiko, Nakayama, Takashi, Yoshida, Masahiro, Worlock, Kaylee B, Nikolić, Marko Z, Georgakopoulos, Nikitas, Mahbubani, Krishnaa T, Saeb-Parsy, Kourosh, Bayraktar, Omer Ali, Clatworthy, Menna R, Stegle, Oliver, Kumasaka, Natsuhiko, Teichmann, Sarah A, Meyer, Kerstin B

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