THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites von Chang, Hsiao-Han, Worby, Colin J, Yeka, Adoke, Nankabirwa, Joaniter, Kamya, Moses R, Staedke, Sarah G, Dorsey, Grant, Murphy, Maxwell, Neafsey, Daniel E, Jeffreys, Anna E, Hubbart, Christina, Rockett, Kirk A, Amato, Roberto, Kwiatkowski, Dominic P, Buckee, Caroline O, Greenhouse, Bryan

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Characterization of within-host Plasmodium falciparum diversity using next-generation sequence data von Auburn, Sarah, Campino, Susana, Miotto, Olivo, Djimde, Abdoulaye A, Zongo, Issaka, Manske, Magnus, Maslen, Gareth, Mangano, Valentina, Alcock, Daniel, MacInnis, Bronwyn, Rockett, Kirk A, Clark, Taane G, Doumbo, Ogobara K, Ouédraogo, Jean Bosco, Kwiatkowski, Dominic P

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Non-O ABO blood group genotypes differ in their associations with Plasmodium falciparum rosetting and severe malaria von Opi, D Herbert, Ndila, Carolyne M, Uyoga, Sophie, Macharia, Alex W, Fennell, Clare, Ochola, Lucy B, Nyutu, Gideon, Siddondo, Bethseba R, Ojal, John, Shebe, Mohammed, Awuondo, Kennedy O, Mturi, Neema, Peshu, Norbert, Tsofa, Benjamin, Band, Gavin, Maitland, Kathryn, Kwiatkowski, Dominic P, Rockett, Kirk A, Williams, Thomas N, Rowe, J Alexandra

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Genome-wide association study of leprosy in Malawi and Mali von Gilchrist, James J, Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J, Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A, Toure, Ousmane B, Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A, Thera, Mahamadou A, Doumbo, Ogobara K, Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M, Warndorff, David K, Crampin, Amelia C, Fine, Paul E M, Fairfax, Benjamin P, Hill, Adrian V S

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Imputation-based meta-analysis of severe malaria in three African populations von Band, Gavin, Le, Quang Si, Jostins, Luke, Pirinen, Matti, Kivinen, Katja, Jallow, Muminatou, Sisay-Joof, Fatoumatta, Bojang, Kalifa, Pinder, Margaret, Sirugo, Giorgio, Conway, David J, Nyirongo, Vysaul, Kachala, David, Molyneux, Malcolm, Taylor, Terrie, Ndila, Carolyne, Peshu, Norbert, Marsh, Kevin, Williams, Thomas N, Alcock, Daniel, Andrews, Robert, Edkins, Sarah, Gray, Emma, Hubbart, Christina, Jeffreys, Anna, Rowlands, Kate, Schuldt, Kathrin, Clark, Taane G, Small, Kerrin S, Teo, Yik Ying, Kwiatkowski, Dominic P, Rockett, Kirk A, Barrett, Jeffrey C, Spencer, Chris C A

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Candidate polymorphisms and severe malaria in a Malian population von Toure, Ousmane, Konate, Salimata, Sissoko, Sibiri, Niangaly, Amadou, Barry, Abdoulaye, Sall, Abdourahmane H, Diarra, Elisabeth, Poudiougou, Belco, Sepulveda, Nuno, Campino, Susana, Rockett, Kirk A, Clark, Taane G, Thera, Mahamadou A, Doumbo, Ogobara

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Temporal evolution of sulfadoxine-pyrimethamine resistance genotypes and genetic diversity in response to a decade of increased interventions against Plasmodium falciparum in north... von Amenga-Etego, Lucas N, Asoala, Victor, Agongo, Godfred, Jacob, Christopher, Goncalves, Sonia, Awandare, Gordon A, Rockett, Kirk A, Kwiatkowski, Dominic

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Glucose-6-phosphate dehydrogenase deficiency and the risk of malaria and other diseases in children in Kenya: a case-control and a cohort study von Uyoga, Sophie, PhD, Ndila, Carolyne M, PhD, Macharia, Alex W, MSc, Nyutu, Gideon, MSc, Shah, Shivang, DPhil, Peshu, Norbert, MD, Clarke, Geraldine M, PhD, Kwiatkowski, Dominic P, Prof, Rockett, Kirk A, PhD, Williams, Thomas N, Prof

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BIRC6 modifies risk of invasive bacterial infection in Kenyan children von Gilchrist, James J, Kariuki, Silvia N, Watson, James A, Band, Gavin, Uyoga, Sophie, Ndila, Carolyne M, Mturi, Neema, Mwarumba, Salim, Mohammed, Shebe, Mosobo, Moses, Alasoo, Kaur, Rockett, Kirk A, Mentzer, Alexander J, Kwiatkowski, Dominic P, Hill, Adrian V S, Maitland, Kathryn, Scott, J Anthony G, Williams, Thomas N

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Human candidate polymorphisms in sympatric ethnic groups differing in malaria susceptibility in Mali von Maiga, Bakary, Dolo, Amagana, Touré, Ousmane, Dara, Victor, Tapily, Amadou, Campino, Susana, Sepulveda, Nuno, Risley, Paul, Silva, Nilupa, Silva, Nipula, Corran, Patrick, Rockett, Kirk A, Kwiatkowski, Dominic, Clark, Taane G, Troye-Blomberg, Marita, Doumbo, Ogobara K

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In vivo characterization of regulatory polymorphisms by allele-specific quantification of RNA polymerase loading von Knight, Julian C., Keating, Brendan J., Rockett, Kirk A., Kwiatkowski, Dominic P.

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A genome wide association study of Plasmodium falciparum susceptibility to 22 antimalarial drugs in Kenya von Wendler, Jason P, Okombo, John, Amato, Roberto, Miotto, Olivo, Kiara, Steven M, Mwai, Leah, Pole, Lewa, O'Brien, John, Manske, Magnus, Alcock, Dan, Drury, Eleanor, Sanders, Mandy, Oyola, Samuel O, Malangone, Cinzia, Jyothi, Dushyanth, Miles, Alistair, Rockett, Kirk A, MacInnis, Bronwyn L, Marsh, Kevin, Bejon, Philip, Nzila, Alexis, Kwiatkowski, Dominic P

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Association of cytokine and Toll-like receptor gene polymorphisms with severe malaria in three regions of Cameroon von Apinjoh, Tobias O, Anchang-Kimbi, Judith K, Njua-Yafi, Clarisse, Mugri, Regina N, Ngwai, Andre N, Rockett, Kirk A, Mbunwe, Eric, Besingi, Richard N, Clark, Taane G, Kwiatkowski, Dominic P, Achidi, Eric A

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Allelic heterogeneity of G6PD deficiency in West Africa and severe malaria susceptibility von Clark, Taane G, Fry, Andrew E, Auburn, Sarah, Campino, Susana, Diakite, Mahamadou, Green, Angela, Richardson, Anna, Teo, Yik Y, Small, Kerrin, Wilson, Jonathan, Jallow, Muminatou, Sisay-Joof, Fatou, Pinder, Margaret, Sabeti, Pardis, Kwiatkowski, Dominic P, Rockett, Kirk A

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Two complement receptor one alleles have opposing associations with cerebral malaria and interact with α + thalassaemia von Opi, D Herbert, Swann, Olivia, Macharia, Alexander, Uyoga, Sophie, Band, Gavin, Ndila, Carolyne M, Harrison, Ewen M, Thera, Mahamadou A, Kone, Abdoulaye K, Diallo, Dapa A, Doumbo, Ogobara K, Lyke, Kirsten E, Plowe, Christopher V, Moulds, Joann M, Shebbe, Mohammed, Mturi, Neema, Peshu, Norbert, Maitland, Kathryn, Raza, Ahmed, Kwiatkowski, Dominic P, Rockett, Kirk A, Williams, Thomas N, Rowe, J Alexandra

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Tumor necrosis factor and lymphotoxin-α polymorphisms and severe malaria in African populations von Clark, Taane G., Diakite, Mahamadou, Auburn, Sarah, Campino, Susana, Fry, Andrew E., Green, Angela, Richardson, Anna, Small, Kerrin, Teo, Yik Y., Wilson, Jonathan, Jallow, Muminatou, Sisay-Joof, Fatou, Pinder, Margaret, Griffiths, Michael, Peshu, Norbert, Williams, Thomas N., Marsh, Kevin, Molyneux, Malcolm E., Taylor, Terrie E., Kirk A., Rockett, Kwiatkoski, Dominic P.

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Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients von Robinson, Timothy, Campino, Susana G, Auburn, Sarah, Assefa, Samuel A, Polley, Spencer D, Manske, Magnus, MacInnis, Bronwyn, Rockett, Kirk A, Maslen, Gareth L, Sanders, Mandy, Quail, Michael A, Chiodini, Peter L, Kwiatkowski, Dominic P, Clark, Taane G, Sutherland, Colin J

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Investigation of host candidate malaria-associated risk/protective SNPs in a Brazilian Amazonian population von da Silva Santos, Simone, Clark, Taane G, Campino, Susana, Suarez-Mutis, Martha Cecília, Rockett, Kirk A, Kwiatkowski, Dominic P, Fernandes, Octavio

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Genomewide Analysis of the Host Response to Malaria in Kenyan Children von Griffiths, Michael J., Shafi, Mohammed J., Popper, Stephen J., Hemingway, Cheryl A., Kortok, Moses M., Wathen, Andrew, Rockett, Kirk A., Mott, Richard, Levin, Michael, Newton, Charles R., Marsh, Kevin, Relman, David A., Kwiatkowski, Dominic P.

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Haplotype association between haptoglobin (Hp2) and Hp promoter SNP (A-61C) may explain previous controversy of haptoglobin and malaria protection von Cox, Sharon E, Doherty, Conor, Atkinson, Sarah H, Nweneka, Chidi V, Fulford, Anthony J C, Ghattas, Hala, Rockett, Kirk A, Kwiatkowski, Dominic P, Prentice, Andrew M

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