Neuro-symbolic representation learning on biological knowledge graphs von Alshahrani, Mona, Khan, Mohammad Asif, Maddouri, Omar, Kinjo, Akira R, Queralt-Rosinach, Núria, Hoehndorf, Robert

Volltext

Plasticity-led evolution as an intrinsic property of developmental gene regulatory networks von Ng, Eden Tian Hwa, Kinjo, Akira R.

Volltext

Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures von Kinjo, Akira R, Bekker, Gert-Jan, Suzuki, Hirofumi, Tsuchiya, Yuko, Kawabata, Takeshi, Ikegawa, Yasuyo, Nakamura, Haruki

Volltext

A new look at an old view of denaturant induced protein unfolding von Hall, Damien, Kinjo, Akira R., Goto, Yuji

Volltext

Cooperative “folding transition” in the sequence space facilitates function-driven evolution of protein families von Kinjo, Akira R.

Volltext

New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj) von Kinjo, Akira R., Bekker, Gert‐Jan, Wako, Hiroshi, Endo, Shigeru, Tsuchiya, Yuko, Sato, Hiromu, Nishi, Hafumi, Kinoshita, Kengo, Suzuki, Hirofumi, Kawabata, Takeshi, Yokochi, Masashi, Iwata, Takeshi, Kobayashi, Naohiro, Fujiwara, Toshimichi, Kurisu, Genji, Nakamura, Haruki

Volltext

Plasticity-led and mutation-led evolutions are different modes of the same developmental gene regulatory network von Ng, Eden T H, Kinjo, Akira R

Volltext

Mechanism of evolution by genetic assimilation: Equivalence and independence of genetic mutation and epigenetic modulation in phenotypic expression von Nishikawa, Ken, Kinjo, Akira R.

Volltext

Molmil: a molecular viewer for the PDB and beyond von Bekker, Gert-Jan, Nakamura, Haruki, Kinjo, Akira R.

Volltext

Human Transcription Factors Contain a High Fraction of Intrinsically Disordered Regions Essential for Transcriptional Regulation von Minezaki, Yoshiaki, Homma, Keiichi, Kinjo, Akira R., Nishikawa, Ken

Volltext

Composite structural motifs of binding sites for delineating biological functions of proteins von Kinjo, Akira R, Nakamura, Haruki

Volltext

Computational modelling of plasticity-led evolution von Ng, Eden Tian Hwa, Kinjo, Akira R.

Volltext

Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format von Kinjo, Akira R., Suzuki, Hirofumi, Yamashita, Reiko, Ikegawa, Yasuyo, Kudou, Takahiro, Igarashi, Reiko, Kengaku, Yumiko, Cho, Hasumi, Standley, Daron M., Nakagawa, Atsushi, Nakamura, Haruki

Volltext

Specific non-local interactions are not necessary for recovering native protein dynamics von Dasgupta, Bhaskar, Kasahara, Kota, Kamiya, Narutoshi, Nakamura, Haruki, Kinjo, Akira R

Volltext

Essential role of long non-coding RNAs in de novo chromatin modifications: the genomic address code hypothesis von Nishikawa, Ken, Kinjo, Akira R.

Volltext

Comprehensive Structural Classification of Ligand-Binding Motifs in Proteins von Kinjo, Akira R., Nakamura, Haruki

Volltext

CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks von Kinjo, Akira R, Nishikawa, Ken

Volltext

Monte Carlo simulation of a statistical mechanical model of multiple protein sequence alignment von Kinjo, Akira R.

Volltext

A unified statistical model of protein multiple sequence alignment integrating direct coupling and insertions von Kinjo, Akira R.

Volltext

Rigid-body motions of interacting proteins dominate multispecific binding of ubiquitin in a shape-dependent manner von Dasgupta, Bhaskar, Nakamura, Haruki, Kinjo, Akira R.

Volltext