ECOD: an evolutionary classification of protein domains von Cheng, Hua, Schaeffer, R Dustin, Liao, Yuxing, Kinch, Lisa N, Pei, Jimin, Shi, Shuoyong, Kim, Bong-Hyun, Grishin, Nick V

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Accurate prediction of protein structures and interactions using a three-track neural network von Baek, Minkyung, DiMaio, Frank, Anishchenko, Ivan, Dauparas, Justas, Ovchinnikov, Sergey, Lee, Gyu Rie, Wang, Jue, Cong, Qian, Kinch, Lisa N, Schaeffer, R Dustin, Millán, Claudia, Park, Hahnbeom, Adams, Carson, Glassman, Caleb R, DeGiovanni, Andy, Pereira, Jose H, Rodrigues, Andria V, van Dijk, Alberdina A, Ebrecht, Ana C, Opperman, Diederik J, Sagmeister, Theo, Buhlheller, Christoph, Pavkov-Keller, Tea, Rathinaswamy, Manoj K, Dalwadi, Udit, Yip, Calvin K, Burke, John E, Garcia, K Christopher, Grishin, Nick V, Adams, Paul D, Read, Randy J, Baker, David

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Structure, lipid scrambling activity and role in autophagosome formation of ATG9A von Maeda, Shintaro, Yamamoto, Hayashi, Kinch, Lisa N., Garza, Christina M., Takahashi, Satoru, Otomo, Chinatsu, Grishin, Nick V., Forli, Stefano, Mizushima, Noboru, Otomo, Takanori

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A Single Kinase Generates the Majority of the Secreted Phosphoproteome von Tagliabracci, Vincent S., Wiley, Sandra E., Guo, Xiao, Kinch, Lisa N., Durrant, Eric, Wen, Jianzhong, Xiao, Junyu, Cui, Jixin, Nguyen, Kim B., Engel, James L., Coon, Joshua J., Grishin, Nick, Pinna, Lorenzo A., Pagliarini, David J., Dixon, Jack E.

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Functional analysis of Rossmann-like domains reveals convergent evolution of topology and reaction pathways von Medvedev, Kirill E, Kinch, Lisa N, Schaeffer, R Dustin, Grishin, Nick V

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Ubiquitin-Induced Oligomerization of the RNA Sensors RIG-I and MDA5 Activates Antiviral Innate Immune Response von Jiang, Xiaomo, Kinch, Lisa N., Brautigam, Chad A., Chen, Xiang, Du, Fenghe, Grishin, Nick V., Chen, Zhijian J.

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Beclin 2 Functions in Autophagy, Degradation of G Protein-Coupled Receptors, and Metabolism von He, Congcong, Wei, Yongjie, Sun, Kai, Li, Binghua, Dong, Xiaonan, Zou, Zhongju, Liu, Yang, Kinch, Lisa N., Khan, Shaheen, Sinha, Sangita, Xavier, Ramnik J., Grishin, Nick V., Xiao, Guanghua, Eskelinen, Eeva-Liisa, Scherer, Philipp E., Whistler, Jennifer L., Levine, Beth

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Protein AMPylation by an Evolutionarily Conserved Pseudokinase von Sreelatha, Anju, Yee, Samantha S., Lopez, Victor A., Park, Brenden C., Kinch, Lisa N., Pilch, Sylwia, Servage, Kelly A., Zhang, Junmei, Jiou, Jenny, Karasiewicz-Urbańska, Monika, Łobocka, Małgorzata, Grishin, Nick V., Orth, Kim, Kucharczyk, Roza, Pawłowski, Krzysztof, Tomchick, Diana R., Tagliabracci, Vincent S.

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Crystal structure of the human sterol transporter ABCG5/ABCG8 von Lee, Jyh-Yeuan, Kinch, Lisa N., Borek, Dominika M., Wang, Jin, Wang, Junmei, Urbatsch, Ina L., Xie, Xiao-Song, Grishin, Nikolai V., Cohen, Jonathan C., Otwinowski, Zbyszek, Hobbs, Helen H., Rosenbaum, Daniel M.

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Mutation severity spectrum of rare alleles in the human genome is predictive of disease type von Pei, Jimin, Kinch, Lisa N, Otwinowski, Zbyszek, Grishin, Nick V

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ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2 von Schaeffer, R Dustin, Zhang, Jing, Medvedev, Kirill E, Kinch, Lisa N, Cong, Qian, Grishin, Nick V

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Evaluation of free modeling targets in CASP11 and ROLL von Kinch, Lisa N., Li, Wenlin, Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Grishin, Nick V.

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Marker for type VI secretion system effectors von Salomon, Dor, Kinch, Lisa N., Trudgian, David C., Guo, Xiaofeng, Klimko, John A., Grishin, Nick V., Mirzaei, Hamid, Orth, Kim

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E3 Ligase Possessing an Iron-Responsive Hemerythrin Domain Is a Regulator of Iron Homeostasis von Salahudeen, Ameen A, Thompson, Joel W, Ruiz, Julio C, Ma, He-Wen, Kinch, Lisa N, Li, Qiming, Grishin, Nick V, Bruick, Richard K

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Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria von Salomon, Dor, Klimko, John A, Trudgian, David C, Kinch, Lisa N, Grishin, Nick V, Mirzaei, Hamid, Orth, Kim

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Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands von Medvedev, Kirill E., Zhang, Jing, Schaeffer, R. Dustin, Kinch, Lisa N., Cong, Qian, Grishin, Nick V.

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A combined RAD-Seq and WGS approach reveals the genomic basis of yellow color variation in bumble bee Bombus terrestris von Rahman, Sarthok Rasique, Cnaani, Jonathan, Kinch, Lisa N., Grishin, Nick V., Hines, Heather M.

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ChSeq: A database of chameleon sequences von Li, Wenlin, Kinch, Lisa N., Karplus, P. Andrew, Grishin, Nick V.

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The Legionella effector RavD binds phosphatidylinositol-3-phosphate and helps suppress endolysosomal maturation of the Legionella-containing vacuole von Pike, Colleen M., Boyer-Andersen, Rebecca, Kinch, Lisa N., Caplan, Jeffrey L., Neunuebel, M. Ramona

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HP1BP3, a Chromatin Retention Factor for Co-transcriptional MicroRNA Processing von Liu, Haoming, Liang, Chunyang, Kollipara, Rahul K., Matsui, Masayuki, Ke, Xiong, Jeong, Byung-Cheon, Wang, Zhiqiang, Yoo, Kyoung Shin, Yadav, Gaya P., Kinch, Lisa N., Grishin, Nicholas V., Nam, Yunsun, Corey, David R., Kittler, Ralf, Liu, Qinghua

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