mixOmics: An R package for 'omics feature selection and multiple data integration von Rohart, Florian, Gautier, Benoît, Singh, Amrit, Lê Cao, Kim-Anh

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Multivariate Data Integration Using R: Methods and Applications with the mixOmics Package von LeCao, Kim-Anh Welham, Zoe Marie

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HLA Alleles Associated With Risk of Ankylosing Spondylitis and Rheumatoid Arthritis Influence the Gut Microbiome von Asquith, Mark, Sternes, Peter R., Costello, Mary‐Ellen, Karstens, Lisa, Diamond, Sarah, Martin, Tammy M., Li, Zhixiu, Marshall, Mhairi S., Spector, Timothy D., Cao, Kim‐Anh, Rosenbaum, James T., Brown, Matthew A.

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DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays von Singh, Amrit, Shannon, Casey P, Gautier, Benoît, Rohart, Florian, Vacher, Michaël, Tebbutt, Scott J, Lê Cao, Kim-Anh

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Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems von Lê Cao, Kim-Anh, Boitard, Simon, Besse, Philippe

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Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments von Tian, Luyi, Dong, Xueyi, Freytag, Saskia, Lê Cao, Kim-Anh, Su, Shian, JalalAbadi, Abolfazl, Amann-Zalcenstein, Daniela, Weber, Tom S., Seidi, Azadeh, Jabbari, Jafar S., Naik, Shalin H., Ritchie, Matthew E.

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PLSDA-batch: a multivariate framework to correct for batch effects in microbiome data von Wang, Yiwen, Lê Cao, Kim-Anh

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Intestinal Metaproteomics Reveals Host-Microbiota Interactions in Subjects at Risk for Type 1 Diabetes von Gavin, Patrick G, Mullaney, Jane A, Loo, Dorothy, Cao, Kim-Anh Lê, Gottlieb, Peter A, Hill, Michelle M, Zipris, Danny, Hamilton-Williams, Emma E

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Statistical challenges in longitudinal microbiome data analysis von Kodikara, Saritha, Ellul, Susan, Lê Cao, Kim-Anh

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Human hepatocellular carcinomas with a periportal phenotype have the lowest potential for early recurrence after curative resection von Désert, Romain, Rohart, Florian, Canal, Frédéric, Sicard, Marie, Desille, Mireille, Renaud, Stéphanie, Turlin, Bruno, Bellaud, Pascale, Perret, Christine, Clément, Bruno, Lê Cao, Kim‐Anh, Musso, Orlando

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integrOmics: an R package to unravel relationships between two omics datasets von CAO, Kim-Anh Lê, GONZALEZ, Ignacio, DEJEAN, Sébastien

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Microbiome profiling reveals gut dysbiosis in a transgenic mouse model of Huntington's disease von Kong, Geraldine, Cao, Kim-Anh Lê, Judd, Louise M., Li, ShanShan, Renoir, Thibault, Hannan, Anthony J.

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A novel approach for biomarker selection and the integration of repeated measures experiments from two assays von Liquet, Benoit, Lê Cao, Kim-Anh, Hocini, Hakim, Thiébaut, Rodolphe

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Altered Repertoire Diversity and Disease‐Associated Clonal Expansions Revealed by T Cell Receptor Immunosequencing in Ankylosing Spondylitis Patients von Hanson, Aimee L., Nel, Hendrik J., Bradbury, Linda, Phipps, Julie, Thomas, Ranjeny, Lê Cao, Kim‐Anh, Kenna, Tony J., Brown, Matthew A.

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Biomarker development for axial spondyloarthritis von Brown, Matthew A., Li, Zhixiu, Cao, Kim-Anh Lê

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MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms von Rohart, Florian, Eslami, Aida, Matigian, Nicholas, Bougeard, Stéphanie, Lê Cao, Kim-Anh

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How does the early life environment influence the oral microbiome and determine oral health outcomes in childhood? von Adler, Christina Jane, Cao, Kim‐Anh Lê, Hughes, Toby, Kumar, Piyush, Austin, Christine

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Multivariate Analysis of Multiple Datasets: a Practical Guide for Chemical Ecology von Hervé, Maxime R., Nicolè, Florence, Lê Cao, Kim-Anh

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MixMC: A Multivariate Statistical Framework to Gain Insight into Microbial Communities von Lê Cao, Kim-Anh, Costello, Mary-Ellen, Lakis, Vanessa Anne, Bartolo, François, Chua, Xin-Yi, Brazeilles, Rémi, Rondeau, Pascale

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Visualising associations between paired 'omics' data sets von González, Ignacio, Cao, Kim-Anh Lê, Davis, Melissa J, Déjean, Sébastien

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