Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks von Rubin, Adam J., Parker, Kevin R., Satpathy, Ansuman T., Qi, Yanyan, Wu, Beijing, Ong, Alvin J., Mumbach, Maxwell R., Ji, Andrew L., Kim, Daniel S., Cho, Seung Woo, Zarnegar, Brian J., Greenleaf, William J., Chang, Howard Y., Khavari, Paul A.

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The Kipoi repository accelerates community exchange and reuse of predictive models for genomics von Avsec, Žiga, Kreuzhuber, Roman, Israeli, Johnny, Xu, Nancy, Cheng, Jun, Shrikumar, Avanti, Banerjee, Abhimanyu, Kim, Daniel S., Beier, Thorsten, Urban, Lara, Kundaje, Anshul, Stegle, Oliver, Gagneur, Julien

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Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation von Rubin, Adam J, Barajas, Brook C, Furlan-Magaril, Mayra, Lopez-Pajares, Vanessa, Mumbach, Maxwell R, Howard, Imani, Kim, Daniel S, Boxer, Lisa D, Cairns, Jonathan, Spivakov, Mikhail, Wingett, Steven W, Shi, Minyi, Zhao, Zhixin, Greenleaf, William J, Kundaje, Anshul, Snyder, Michael, Chang, Howard Y, Fraser, Peter, Khavari, Paul A

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Actionable, Pathogenic Incidental Findings in 1,000 Participants’ Exomes von Dorschner, Michael O., Amendola, Laura M., Turner, Emily H., Robertson, Peggy D., Shirts, Brian H., Gallego, Carlos J., Bennett, Robin L., Jones, Kelly L., Tokita, Mari J., Bennett, James T., Kim, Jerry H., Rosenthal, Elisabeth A., Kim, Daniel S., Tabor, Holly K., Bamshad, Michael J., Motulsky, Arno G., Scott, C. Ronald, Pritchard, Colin C., Walsh, Tom, Burke, Wylie, Raskind, Wendy H., Byers, Peter, Hisama, Fuki M., Nickerson, Deborah A., Jarvik, Gail P.

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Parallel reaction monitoring (PRM) and selected reaction monitoring (SRM) exhibit comparable linearity, dynamic range and precision for targeted quantitative HDL proteomics von Ronsein, Graziella E., Pamir, Nathalie, von Haller, Priska D., Kim, Daniel S., Oda, Michael N., Jarvik, Gail P., Vaisar, Tomas, Heinecke, Jay W.

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Value of corruption in China: Evidence from anti-corruption investigation von Kim, Daniel S., Li, Yun, Tarzia, Domenico

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Dynamics of analyst forecasts and emergence of complexity: Role of information disparity von Kim, Chansoo, Kim, Daniel S, Ahn, Kwangwon, Choi, M Y

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Cortisol modulates the expression of cytokines and suppressors of cytokine signaling (SOCS) in rainbow trout hepatocytes von Philip, Anju M., Daniel Kim, S., Vijayan, Mathilakath M.

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Measurement of proximal contact of single crowns to assess interproximal relief: A pilot study von Kim, Daniel S., Lau, Le Na, Kim, Jong-Woong, Yeo, In-Sung Luke

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Transcriptome Profile Alteration with Cadmium Selenide/Zinc Sulfide Quantum Dots in Saccharomyces cerevisiae von Horstmann, Cullen, Kim, Daniel S, Campbell, Chelsea, Kim, Kyoungtae

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Deep Learning on Chromatin Accessibility von Kim, Daniel S.

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ATAC-seq Data Processing von Kim, Daniel S.

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Intracellular Trafficking and Distribution of Cd and InP Quantum Dots in HeLa and ML-1 Thyroid Cancer Cells von Zhang, Min, Kim, Daniel S, Patel, Rishi, Wu, Qihua, Kim, Kyoungtae

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Effect of delay in presentation on rate of perforation in children with appendicitis von Narsule, Chaitan K., MD, Kahle, Eden J., MD, Kim, Daniel S., MD, Anderson, Angela C., MD, Luks, Francois I., MD, PhD

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Association of exome sequences with plasma C-reactive protein levels in >9000 participants von Schick, Ursula M, Auer, Paul L, Bis, Joshua C, Lin, Honghuang, Wei, Peng, Pankratz, Nathan, Lange, Leslie A, Brody, Jennifer, Stitziel, Nathan O, Kim, Daniel S, Carlson, Christopher S, Fornage, Myriam, Haessler, Jeffery, Hsu, Li, Jackson, Rebecca D, Kooperberg, Charles, Leal, Suzanne M, Psaty, Bruce M, Boerwinkle, Eric, Tracy, Russell, Ardissino, Diego, Shah, Svati, Willer, Cristen, Loos, Ruth, Melander, Olle, Mcpherson, Ruth, Hovingh, Kees, Reilly, Muredach, Watkins, Hugh, Girelli, Domenico, Fontanillas, Pierre, Chasman, Daniel I, Gabriel, Stacey B, Gibbs, Richard, Nickerson, Deborah A, Kathiresan, Sekar, Peters, Ulrike, Dupuis, Josée, Wilson, James G, Rich, Stephen S, Morrison, Alanna C, Benjamin, Emelia J, Gross, Myron D, Reiner, Alex P

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Loci identified by a genome‐wide association study of carotid artery stenosis in the eMERGE network von Palmer, Melody R., Kim, Daniel S., Crosslin, David R., Stanaway, Ian B., Rosenthal, Elisabeth A., Carrell, David S., Cronkite, David J., Gordon, Adam, Du, Xiaomeng, Li, Yatong K., Williams, Marc S., Weng, Chunhua, Feng, Qiping, Li, Rongling, Pendergrass, Sarah A., Hakonarson, Hakon, Fasel, David, Sohn, Sunghwan, Sleiman, Patrick, Handelman, Samuel K., Speliotes, Elizabeth, Kullo, Iftikhar J., Larson, Eric B., Jarvik, Gail P.

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Postoperative electroencephalographic seizures are associated with deficits in executive function and social behaviors at 4 years of age following cardiac surgery in infancy von Gaynor, J. William, MD, Jarvik, Gail P., MD, PhD, Gerdes, Marsha, PhD, Kim, Daniel S., BS, Rajagopalan, Ramakrishnan, MS, Bernbaum, Judy, MD, Wernovsky, Gil, MD, Nicolson, Susan C., MD, Spray, Thomas L., MD, Clancy, Robert R., MD

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Targeting Mitochondrial Damage as a Therapeutic for Ileal Crohn's Disease von Alula, Kibrom M., Jackson, Dakota N., Smith, Andrew D., Kim, Daniel S., Turner, Kevin, Odstrcil, Elizabeth, Kaipparettu, Benny A., Dassopoulos, Themistocles, Venuprasad, K., Feagins, Linda A., Theiss, Arianne L.

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Novel gene-by-environment interactions: APOB and NPC1L1 variants affect the relationship between dietary and total plasma cholesterol[S] von Kim, Daniel S., Burt, Amber A., Ranchalis, Jane E., Jarvik, Ella R., Rosenthal, Elisabeth A., Hatsukami, Thomas S., Furlong, Clement E., Jarvik, Gail P.

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Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts von Nair, Surag, Kim, Daniel S, Perricone, Jacob, Kundaje, Anshul

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