Real-world implementation of non-endoscopic triage testing for Barrett’s oesophagus during COVID-19 von Landy, R, Killcoyne, S, Tang, C, Juniat, S, O’Donovan, M, Goel, N, Gehrung, M, Fitzgerald, R C

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T1DBase: integration and presentation of complex data for type 1 diabetes research von Hulbert, Erin M, Smink, Luc J, Adlem, Ellen C, Allen, James E, Burdick, David B, Burren, Oliver S, Cavnor, Christopher C, Dolman, Geoffrey E, Flamez, Daisy, Friery, Karen F, Healy, Barry C, Killcoyne, Sarah A, Kutlu, Burak, Schuilenburg, Helen, Walker, Neil M, Mychaleckyj, Josyf, Eizirik, Decio L, Wicker, Linda S, Todd, John A, Goodman, Nathan

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Cytoscape: A Community-Based Framework for Network Modeling von Killcoyne, Sarah, Carter, Gregory W., Smith, Jennifer, Boyle, John

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GENOMIC TEST PREDICTS MALIGNANT TRANSFORMATION OF BARRETT'S ESOPHAGUS von Killcoyne, S., Gregson, E., Wedge, D. C., Woodcock, D. J., Eldridge, M. D., de la Rue, R.

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Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas von Ng, AWT, Contino, G, Killcoyne, S, Devonshire, G, Hsu, R, Abbas, S, Su, J, Redmond, AM, Weaver, JMJ, Eldridge, MD, Tavaré, S, Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS) Consortium, Edwards, PAW, Fitzgerald, RC

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The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic von Frankell, AM, Jammula, S, Li, X, Contino, G, Killcoyne, S, Abbas, S, Perner, J, Bower, L, Devonshire, G, Cocks, E, Grehan, N, Mok, J, O'Donovan, M, MacRae, S, Eldridge, MD, Tavare, S, Fitzgerald, RC, Noorani, A, Edwards, PAW, Grehanl, N, Nutzinger, B, Hughes, CI, Fidziukiewicz, E, Northrop, A, De la Rue, R, Katz-Summercorn, A, Loureda, D, Miremadi, A, Malhotra, S, Tripathi, M, Lynch, AG, Eldridge, M, Secrier, M, Davies, J, Crichton, C, Carro, N, Safranek, P, Hindmarsh, A, Sujendran, V, Hayes, SJ, Ang, Y, Sharrocks, A, Preston, SR, Oakes, S, Bagwan, I, Save, V, Skipworth, RJE, Hupp, TR, ONeill, JR, Tucker, O, Beggs, A, Taniere, P, Puig, S, Underwood, T, Walker, RC, Grace, BL, Barr, H, Shepherd, N, Old, O, Lagergren, J, Gossage, J, Davies, A, Chang, F, Zylstra, J, Mahadeva, U, Goh, V, Ciccarelli, FD, Sanders, G, Berrisford, R, Harden, C, Lewis, M, Cheong, E, Kumar, B, Parsons, SL, Soomro, I, Kaye, P, Saunders, J, Lovat, L, Haidry, R, Igali, L, Scott, M, Sothi, S, Suortamo, S, Lishman, S, Hanna, GB, Moorthy, K, Peters, CJ, Grabowska, A, Turkington, R, McManus, D, Coleman, H, Khoo, D, Fickling, W

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Interfaces to PeptideAtlas: a case study of standard data access systems von KILLCOYNE, Sarah, HANDCOCK, Jeremy, ROBINSON, Thomas, DEUTSCH, Eric W, BOYLE, John

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Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas von Ng, AWT, Contino, G, Killcoyne, S, Devonshire, G, Hsu, R, Abbas, S, Su, J, Redmond, AM, Weaver, JMJ, Eldridge, MD, Tavaré, S, Grehan, N, Nutzinger, B, Fidziukiewicz, E, Freeman, A, Smyth, EC, O’Donovan, M, Miremadi, A, Malhotra, S, Tripathi, M, Cheah, C, Coles, H, Flint, C, Eldridge, M, Secrier, M, Jammula, S, Davies, J, Crichton, C, Carroll, N, Hardwick, RH, Safranek, P, Hindmarsh, A, Sujendran, V, Hayes, SJ, Ang, Y, Sharrocks, A, Preston, SR, Bagwan, I, Save, V, Skipworth, RJE, Hupp, TR, O’Neill, JR, Tucker, O, Beggs, A, Taniere, P, Puig, S, Underwood, TJ, Walker, RC, Grace, BL, Lagergren, J, Gossage, J, Davies, A, Chang, F, Mahadeva, U, Goh, V, Ciccarelli, FD, Sanders, G, Berrisford, R, Chan, D, Cheong, E, Kumar, B, Sreedharan, L, Parsons, SL, Soomro, I, Kaye, P, Saunders, J, Lovat, L, Haidry, R, Scott, M, Sothi, S, Lishman, S, Hanna, GB, Peters, CJ, Moorthy, K, Grabowska, A, Turkington, R, McManus, D, Coleman, H, Petty, RD, Bartlett, F, Edwards, PAW, Fitzgerald, RC

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Identification of Subtypes of Barrett’s Esophagus and Esophageal Adenocarcinoma Based on DNA Methylation Profiles and Integration of Transcriptome and Genome Data von Jammula, S, Katz-Summercorn, AC, Li, X, Linossi, C, Smyth, E, Killcoyne, S, Biasci, D, Subash, VV, Abbas, S, Blasko, A, Devonshire, G, Grantham, A, Wronowski, F, O'Donovan, M, Grehan, N, Eldridge, MD, Tavaré, S, Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS, Fitzgerald, RC

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The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic von Frankell, AM, Jammula, S, Li, X, Contino, G, Killcoyne, S, Abbas, S, Perner, J, Bower, L, Devonshire, G, Ococks, E, Grehan, N, Mok, J, O'Donovan, M, MacRae, S, Eldridge, MD, Tavaré, S, Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS, Fitzgerald, RC

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Identification of Prognostic Phenotypes of Esophageal Adenocarcinoma in 2 Independent Cohorts von Sawas, T, Killcoyne, S, Iyer, PG, Wang, KK, Smyrk, TC, Kisiel, JB, Qin, Y, Ahlquist, DA, Rustgi, AK, Costa, RJ, Gerstung, M, Fitzgerald, RC, Katzka, DA, OCCAMS Consortium

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Howdah - A Flexible Pipeline Framework for Analyzing Genomic Data von Lewis, S, Reynolds, S, Rovera, H, O'Leary, M, Killcoyne, S, Shmulevich, I, Boyle, J

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Mo1039 EARLY DETECTION OF ESOPHAGEAL ADENOCARCINOMA PROGRESSION USING WHOLE-GENOME COPY NUMBER IN PREMALIGNANT TISSUE von Killcoyne, Sarah

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Evolution and progression of Barrett’s oesophagus to oesophageal cancer von Killcoyne, Sarah, Fitzgerald, Rebecca C.

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Genomic copy number predicts esophageal cancer years before transformation von Killcoyne, Sarah, Gregson, Eleanor, Wedge, David C., Woodcock, Dan J., Eldridge, Matthew D., de la Rue, Rachel, Miremadi, Ahmad, Abbas, Sujath, Blasko, Adrienn, Kosmidou, Cassandra, Januszewicz, Wladyslaw, Jenkins, Aikaterini Varanou, Gerstung, Moritz, Fitzgerald, Rebecca C.

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Practical early cancer detection: distinguishing stable from unstable genomes in pre-cancerous tissues von Killcoyne, Sarah, Fitzgerald, Rebecca C.

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Genomic instability signals offer diagnostic possibility in early cancer detection von Killcoyne, Sarah, Yusuf, Aisha, Fitzgerald, Rebecca C.

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Managing Chaos: Bridging the cultural divide between engineers and scientists working within the life sciences von Killcoyne, Sarah, Boyle, John

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Identification of Subtypes of Barrett’s Esophagus and Esophageal Adenocarcinoma Based on DNA Methylation Profiles and Integration of Transcriptome and Genome Data von Jammula, SriGanesh, Katz-Summercorn, Annalise C., Li, Xiaodun, Linossi, Constanza, Smyth, Elizabeth, Killcoyne, Sarah, Biasci, Daniele, Subash, Vinod V., Abbas, Sujath, Blasko, Adrienn, Devonshire, Ginny, Grantham, Amber, Wronowski, Filip, O’Donovan, Maria, Grehan, Nicola, Eldridge, Matthew D., Tavaré, Simon, Fitzgerald, Rebecca C., Noorani, Ayesha, Edwards, Paul A.W., Grehan, Nicola, Nutzinger, Barbara, Hughes, Caitriona, Fidziukiewicz, Elwira, Bornschein, Jan, MacRae, Shona, Crawte, Jason, Northrop, Alex, Contino, Gianmarco, Li, Xiaodun, de la Rue, Rachel, O’Donovan, Maria, Miremadi, Ahmad, Malhotra, Shalini, Tripathi, Monika, Tavaré, Simon, Lynch, Andy G., Eldridge, Matthew, Secrier, Maria, Bower, Lawrence, Devonshire, Ginny, Perner, Juliane, Jammula, Sriganesh, Davies, Jim, Crichton, Charles, Carroll, Nick, Safranek, Peter, Hindmarsh, Andrew, Sujendran, Vijayendran, Hayes, Stephen J., Ang, Yeng, Preston, Shaun R., Oakes, Sarah, Bagwan, Izhar, Save, Vicki, Skipworth, Richard J.E., Hupp, Ted R., O’Neill, J. Robert, Tucker, Olga, Beggs, Andrew, Taniere, Philippe, Puig, Sonia, Underwood, Timothy J., Noble, Fergus, Owsley, Jack, Barr, Hugh, Shepherd, Neil, Old, Oliver, Lagergren, Jesper, Gossage, James, Davies, Andrew, Chang, Fuju, Zylstra, Janine, Mahadeva, Ula, Goh, Vicky, Ciccarelli, Francesca D., Sanders, Grant, Berrisford, Richard, Harden, Catherine, Lewis, Mike, Cheong, Ed, Kumar, Bhaskar, Parsons, Simon L., Soomro, Irshad, Kaye, Philip, Saunders, John, Lovat, Laurence, Haidry, Rehan, Igali, Laszlo, Scott, Michael, Sothi, Sharmila, Suortamo, Sari, Lishman, Suzy, Hanna, George B., Moorthy, Krishna, Peters, Christopher J., Grabowska, Anna, Turkington, Richard, Fitzgerald, Rebecca C.

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Identification of Prognostic Phenotypes of Esophageal Adenocarcinoma in 2 Independent Cohorts von Sawas, Tarek, Killcoyne, Sarah, Iyer, Prasad G., Wang, Kenneth K., Smyrk, Thomas C., Kisiel, John B., Qin, Yi, Ahlquist, David A., Rustgi, Anil K., Costa, Rui J., Gerstung, Moritz, Fitzgerald, Rebecca C., Katzka, David A., Noorani, Ayesha, Edwards, Paul A.W., Grehan, Nicola, Nutzinger, Barbara, Hughes, Caitriona, Fidziukiewicz, Elwira, Bornschein, Jan, MacRae, Shona, Crawte, Jason, Contino, Gianmarco, Li, Xiaodun, Rue, Rachel de la, O’Donovan, Maria, Miremad, Ahmad, Malhotra, Shalini, Tripathi, Monika, Tavaré, Simon, Lynch, Andy G., Eldridge, Matthew, Secrier, Maria, Bower, Lawrence, Devonshire, Ginny, Perner, Juliane, Jammula, Sriganesh, Davies, Jim, Crichton, Charles, Carroll, Nick, Safranek, Peter, Hindmarsh, Andrew, Sujendran, Vijayendran, Hayes, Stephen J., Ang, Yeng, Preston, Shaun R., Oakes, Sarah, Bagwan, Izhar, Save, Vicki, Skipworth, Richard J.E., Hupp, Ted R., O’Neill, J. Robert, Tucker, Olga, Beggs, Andrew, Taniere, Philippe, Puig, Sonia, Underwood, Timothy J., Noble, Fergus, Owsley, Jack, Barr, Hugh, Shepherd, Neil, Old, Oliver, Lagergren, Jesper, Gossage, James, Davies, Andrew, Chang, Fuju, Zylstra, Janine, Mahadeva, Ula, Goh, Vicky, Ciccarelli, Francesca D., Sanders, Grant, Berrisford, Richard, Harden, Catherine, Bunting, David, Lewis, Mike, Cheong, Ed, Kumar, Bhaskar, Parsons, Simon L., Soomro, Irshad, Kaye, Philip, Saunders, John, Lovat, Laurence, Haidry, Rehan, Eneh, Victor, Igali, Laszlo, Scott, Michael, Sothi, Sharmila, Suortamo, Sari, Lishman, Suzy, Hanna, George B., Peters, Christopher J., Grabowska, Anna, Turkington, Richard

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