Computationally efficient graph neural/convolutional network captures protein geometry to predict affinity and developability von Khade, Pranav M., Gligorijevic, Vladimir, Watkins, Andrew

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Characterizing and Predicting Protein Hinges for Mechanistic Insight von Khade, Pranav M., Kumar, Ambuj, Jernigan, Robert L.

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hdANM: a new comprehensive dynamics model for protein hinges von Khade, Pranav M., Scaramozzino, Domenico, Kumar, Ambuj, Lacidogna, Giuseppe, Carpinteri, Alberto, Jernigan, Robert L.

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Structural compliance: A new metric for protein flexibility von Scaramozzino, Domenico, Khade, Pranav M., Jernigan, Robert L., Lacidogna, Giuseppe, Carpinteri, Alberto

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GOThresher: a program to remove annotation biases from protein function annotation datasets von Joshi, Parnal, Banerjee, Sagnik, Hu, Xiao, Khade, Pranav M, Friedberg, Iddo

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Protein Fluctuations in Response to Random External Forces von Scaramozzino, Domenico, Khade, Pranav M., Jernigan, Robert L.

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Entropies Derived from the Packing Geometries within a Single Protein Structure von Khade, Pranav M., Jernigan, Robert L.

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PACKMAN-Molecule: Python toolbox for structural bioinformatics von Khade, Pranav M, Jernigan, Robert L

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Coarse-graining protein structures into their dynamic communities with DCI, a dynamic community identifier von Kumar, Ambuj, Khade, Pranav M, Dorman, Karin S, Jernigan, Robert L

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Coarse-graining protein structures into their dynamic communities with DCI, a dynamic community identifier von Kumar, Ambuj, Khade, Pranav M, Dorman, Karin S, Jernigan, Robert L

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Aggregation sickle hemoglobin von Anderson, Vinchencia, Khade, Pranav M., Kumar, Ambuj, Jia, Kejue, Jernigan, Robert L.

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Fast, simple molecular entropy calculations from Voronoi diagrams of a single structure von Khade, Pranav M., Jernigan, Robert L.

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Hd-ANM a Computationally Efficient, Highly Customizable and Comprehensive Elastic Network Model von Khade, Pranav M., Scaramozzino, Domenico, Kumar, Ambuj, Jernigan, Robert L.

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Generating Protein Ensembles by Applying Forces to an Improved Elastic Network Model von Kumar, Ambuj, Khade, Pranav M., Scaramozzino, Domenico, Dorman, Karin, Jernigan, Robert L.

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Using Alpha Shapes to Characterize Protein Packing and Capture the Multiscale Aspects of Allostery von Khade, Pranav M., Kumar, Ambuj, Jernigan, Robert L.

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Structural Compliance – A New Metric for Protein Flexibility: Measuring Protein Flexibility von Scaramozzino, Domenico, Khade, Pranav M., Jernigan, Robert L., Lacidogna, Giuseppe, Carpinteri, Alberto

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Using Surface Hydrophobicity Together with Empirical Potentials to Identify Protein–Protein Binding Sites: Application to the Interactions of E-cadherins von Jernigan, Robert L., Khade, Pranav, Kumar, Ambuj, Kloczkowski, Andrzej

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Primary Ovarian Leiomyoma: A Common Tumor at an Uncommon Site von Belapurkar, Gauri, Khade, Archana, Tijare, Jayashree, Helwatkar, Satish

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Full color emitting fluorescent carbon material as reversible pH sensor with multicolor live cell imaging von Sharma, Vinay, Kaur, Navpreet, Tiwari, Pranav, Mobin, Shaikh M.

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A novel measure to analyze protein structures: Aspect ratio in protein alpha shapes von Bagci, Elife Z., Senguler‐Ciftci, Fatma, Ciftci, Unver, Demir, Ayhan

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