Covasim: An agent-based model of COVID-19 dynamics and interventions von Kerr, Cliff C., Stuart, Robyn M., Mistry, Dina, Abeysuriya, Romesh G., Rosenfeld, Katherine, Hart, Gregory R., Nunez, Rafael C., Cohen, Jamie A., Selvaraj, Prashanth, Hagedorn, Brittany, George, Lauren, Jastrzebski, Michal, Izzo, Amanda S., Fowler, Greer, Palmer, Anna, Delport, Dominic, Scott, Nick, Kelly, Sherrie L., Bennette, Caroline S., Wagner, Bradley G., Chang, Stewart T., Oron, Assaf P., Wenger, Edward A., Panovska-Griffiths, Jasmina, Famulare, Michael, Klein, Daniel J.

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Controlling COVID-19 via test-trace-quarantine von Kerr, Cliff C., Mistry, Dina, Stuart, Robyn M., Rosenfeld, Katherine, Hart, Gregory R., Núñez, Rafael C., Cohen, Jamie A., Selvaraj, Prashanth, Abeysuriya, Romesh G., Jastrzębski, Michał, George, Lauren, Hagedorn, Brittany, Panovska-Griffiths, Jasmina, Fagalde, Meaghan, Duchin, Jeffrey, Famulare, Michael, Klein, Daniel J.

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NetPyNE, a tool for data-driven multiscale modeling of brain circuits von Dura-Bernal, Salvador, Suter, Benjamin A, Gleeson, Padraig, Cantarelli, Matteo, Quintana, Adrian, Rodriguez, Facundo, Kedziora, David J, Chadderdon, George L, Kerr, Cliff C, Neymotin, Samuel A, McDougal, Robert A, Hines, Michael, Shepherd, Gordon Mg, Lytton, William W

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Inferring the natural history of HPV from global cancer registries: insights from a multi-country calibration von Stuart, Robyn M., Cohen, Jamie A., Abeysuriya, Romesh G., Sanz-Leon, Paula, Kerr, Cliff C., Rao, Darcy, Klein, Daniel J.

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HPVsim: An agent-based model of HPV transmission and cervical disease von Stuart, Robyn M, Cohen, Jamie A, Kerr, Cliff C, Mathur, Prashant, Abeysuriya, Romesh G, Zimmermann, Marita, Rao, Darcy W, Boudreau, Mariah C, Lee, Serin, Yang, Luojun, Klein, Daniel J

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Preventing a cluster from becoming a new wave in settings with zero community COVID-19 cases von Abeysuriya, Romesh G, Delport, Dominic, Stuart, Robyn M, Sacks-Davis, Rachel, Kerr, Cliff C, Mistry, Dina, Klein, Daniel J, Hellard, Margaret, Scott, Nick

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Training a spiking neuronal network model of visual-motor cortex to play a virtual racket-ball game using reinforcement learning von Anwar, Haroon, Caby, Simon, Dura-Bernal, Salvador, D'Onofrio, David, Hasegan, Daniel, Deible, Matt, Grunblatt, Sara, Chadderdon, George L, Kerr, Cliff C, Lakatos, Peter, Lytton, William W, Hazan, Hananel, Neymotin, Samuel A

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Frequent and unpredictable changes in COVID-19 policies and restrictions reduce the accuracy of model forecasts von Houdroge, Farah, Palmer, Anna, Delport, Dominic, Walsh, Tom, Kelly, Sherrie L., Hainsworth, Samuel W., Abeysuriya, Romesh, Stuart, Robyn M., Kerr, Cliff C., Coplan, Paul, Wilson, David P., Scott, Nick

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The changing health impact of vaccines in the COVID-19 pandemic: A modeling study von Cohen, Jamie A., Stuart, Robyn M., Panovska-Griffiths, Jasmina, Mudimu, Edinah, Abeysuriya, Romesh G., Kerr, Cliff C., Famulare, Michael, Klein, Daniel J.

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Risk of sustained SARS-CoV-2 transmission in Queensland, Australia von Sanz-Leon, Paula, Stevenson, Nathan J., Stuart, Robyn M., Abeysuriya, Romesh G., Pang, James C., Lambert, Stephen B., Kerr, Cliff C., Roberts, James A.

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Optimal allocation of HIV resources among geographical regions von Kedziora, David J, Stuart, Robyn M, Pearson, Jonathan, Latypov, Alisher, Dierst-Davies, Rhodri, Duda, Maksym, Avaliani, Nata, Wilson, David P, Kerr, Cliff C

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Optimization by Adaptive Stochastic Descent von Kerr, Cliff C, Dura-Bernal, Salvador, Smolinski, Tomasz G, Chadderdon, George L, Wilson, David P

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Role of masks, testing and contact tracing in preventing COVID-19 resurgences: a case study from New South Wales, Australia von Stuart, Robyn M, Abeysuriya, Romesh G, Kerr, Cliff C, Mistry, Dina, Klein, Dan J, Gray, Richard T, Hellard, Margaret, Scott, Nick

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Optima TB: A tool to help optimally allocate tuberculosis spending von Gosce, Lara, Abou Jaoude, Gerard J., Kedziora, David J., Benedikt, Clemens, Hussain, Azfar, Jarvis, Sarah, Skrahina, Alena, Klimuk, Dzmitry, Hurevich, Henadz, Zhao, Feng, Fraser-Hurt, Nicole, Cheikh, Nejma, Gorgens, Marelize, Wilson, David J., Abeysuriya, Romesh, Martin-Hughes, Rowan, Kelly, Sherrie L., Roberts, Anna, Stuart, Robyn M., Palmer, Tom, Panovska-Griffiths, Jasmina, Kerr, Cliff C., Wilson, David P., Haghparast-Bidgoli, Hassan, Skordis, Jolene, Abubakar, Ibrahim

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Optima Nutrition: an allocative efficiency tool to reduce childhood stunting by better targeting of nutrition-related interventions von Pearson, Ruth, Killedar, Madhura, Petravic, Janka, Kakietek, Jakub J, Scott, Nick, Grantham, Kelsey L, Stuart, Robyn M, Kedziora, David J, Kerr, Cliff C, Skordis-Worrall, Jolene, Shekar, Meera, Wilson, David P

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Cortical plasticity induced by spike-triggered microstimulation in primate somatosensory cortex von Song, Weiguo, Kerr, Cliff C, Lytton, William W, Francis, Joseph T

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Estimating and mitigating the risk of COVID-19 epidemic rebound associated with reopening of international borders in Vietnam: a modelling study von Pham, Quang D, Stuart, Robyn M, Nguyen, Thuong V, Luong, Quang C, Tran, Quang D, Pham, Thai Q, Phan, Lan T, Dang, Tan Q, Tran, Duong N, Do, Hung T, Mistry, Dina, Klein, Daniel J, Abeysuriya, Romesh G, Oron, Assaf P, Kerr, Cliff C

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Maximizing the impact of malaria funding through allocative efficiency: using the right interventions in the right locations von Scott, Nick, Hussain, S Azfar, Martin-Hughes, Rowan, Fowkes, Freya J I, Kerr, Cliff C, Pearson, Ruth, Kedziora, David J, Killedar, Madhura, Stuart, Robyn M, Wilson, David P

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Estimating the Cost-Effectiveness of HIV Prevention Programmes in Vietnam, 2006-2010: A Modelling Study von Pham, Quang Duy, Wilson, David P, Kerr, Cliff C, Shattock, Andrew J, Do, Hoa Mai, Duong, Anh Thuy, Nguyen, Long Thanh, Zhang, Lei

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Reinforcement learning of targeted movement in a spiking neuronal model of motor cortex von Chadderdon, George L, Neymotin, Samuel A, Kerr, Cliff C, Lytton, William W

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