Advances in constraint-based models: methods for improved predictive power based on resource allocation constraints von Kerkhoven, Eduard J

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RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor von Wang, Hao, Marcišauskas, Simonas, Sánchez, Benjamín J, Domenzain, Iván, Hermansson, Daniel, Agren, Rasmus, Nielsen, Jens, Kerkhoven, Eduard J

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Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints von Sánchez, Benjamín J, Zhang, Cheng, Nilsson, Avlant, Lahtvee, Petri‐Jaan, Kerkhoven, Eduard J, Nielsen, Jens

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Systems‐level approaches for understanding and engineering of the oleaginous cell factory Yarrowia lipolytica von Poorinmohammad, Naghmeh, Kerkhoven, Eduard J.

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A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism von Lu, Hongzhong, Li, Feiran, Sánchez, Benjamín J., Zhu, Zhengming, Li, Gang, Domenzain, Iván, Marcišauskas, Simonas, Anton, Petre Mihail, Lappa, Dimitra, Lieven, Christian, Beber, Moritz Emanuel, Sonnenschein, Nikolaus, Kerkhoven, Eduard J., Nielsen, Jens

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Multiscale models quantifying yeast physiology: towards a whole-cell model von Lu, Hongzhong, Kerkhoven, Eduard J., Nielsen, Jens

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Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast von Malina, Carl, Yu, Rosemary, Björkeroth, Johan, Kerkhoven, Eduard J., Nielsen, Jens

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Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0 von Domenzain, Iván, Sánchez, Benjamín, Anton, Mihail, Kerkhoven, Eduard J., Millán-Oropeza, Aarón, Henry, Céline, Siewers, Verena, Morrissey, John P., Sonnenschein, Nikolaus, Nielsen, Jens

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Single-cell omics analysis with genome-scale metabolic modeling von Chen, Yu, Gustafsson, Johan, Yang, Jingyu, Nielsen, Jens, Kerkhoven, Eduard J

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Genome‐scale model of Rhodotorula toruloides metabolism von Tiukova, Ievgeniia A., Prigent, Sylvain, Nielsen, Jens, Sandgren, Mats, Kerkhoven, Eduard J.

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Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints von Li, Feiran, Chen, Yu, Qi, Qi, Wang, Yanyan, Yuan, Le, Huang, Mingtao, Elsemman, Ibrahim E., Feizi, Amir, Kerkhoven, Eduard J., Nielsen, Jens

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Advancing metabolic engineering of Yarrowia lipolytica using the CRISPR/Cas system von Shi, Tian-Qiong, Huang, He, Kerkhoven, Eduard J., Ji, Xiao-Jun

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Validated Growth Rate-Dependent Regulation of Lipid Metabolism in Yarrowia lipolytica von Poorinmohammad, Naghmeh, Fu, Jing, Wabeke, Bob, Kerkhoven, Eduard J.

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Barriers and opportunities in bio-based production of hydrocarbons von Zhou, Yongjin J., Kerkhoven, Eduard J., Nielsen, Jens

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Abolishing storage lipids induces protein misfolding and stress responses in Yarrowia lipolytica von Zaghen, Simone, Konzock, Oliver, Fu, Jing, Kerkhoven, Eduard J

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Engineering of Saccharomyces cerevisiae for enhanced metabolic robustness and L-lactic acid production from lignocellulosic biomass von Choi, Bohyun, Tafur Rangel, Albert, Kerkhoven, Eduard J., Nygård, Yvonne

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Advances in genome-scale metabolic models of industrially important fungi von Han, Yichao, Tafur Rangel, Albert, Pomraning, Kyle R, Kerkhoven, Eduard J, Kim, Joonhoon

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Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0 von Chen, Yu, Gustafsson, Johan, Tafur Rangel, Albert, Anton, Mihail, Domenzain, Iván, Kittikunapong, Cheewin, Li, Feiran, Yuan, Le, Nielsen, Jens, Kerkhoven, Eduard J.

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An atlas of human metabolism von Robinson, Jonathan L., Kocabas, Pinar, Wang, Hao, Cholley, Pierre-Etienne, Cook, Daniel, Nilsson, Avlant, Anton, Mihail, Ferreira, Raphael, Domenzain, Ivan, Billa, Virinchi, Limeta, Angelo, Hedin, Alex, Gustafsson, Johan, Kerkhoven, Eduard J., Svensson, L. Thomas, Palsson, Bernhard O., Mardinoglu, Adil, Hansson, Lena, Uhlen, Mathias, Nielsen, Jens

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Resin acids play key roles in shaping microbial communities during degradation of spruce bark von Ristinmaa, Amanda Sörensen, Tafur Rangel, Albert, Idström, Alexander, Valenzuela, Sebastian, Kerkhoven, Eduard J., Pope, Phillip B., Hasani, Merima, Larsbrink, Johan

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