SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes von Jungreis, Irwin, Sealfon, Rachel, Kellis, Manolis

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ChromHMM: automating chromatin-state discovery and characterization von Ernst, Jason, Kellis, Manolis

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Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues von Ernst, Jason, Kellis, Manolis

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Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments von Kheradpour, Pouya, Kellis, Manolis

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HaploReg v4: systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and disease von Ward, Lucas D, Kellis, Manolis

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Discovery and characterization of chromatin states for systematic annotation of the human genome von Kellis, Manolis, Ernst, Jason

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Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals von Washietl, Stefan, Kellis, Manolis, Garber, Manuel

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Interpreting noncoding genetic variation in complex traits and human disease von Ward, Lucas D, Kellis, Manolis

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Joint Bayesian inference of risk variants and tissue-specific epigenomic enrichments across multiple complex human diseases von Li, Yue, Kellis, Manolis

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Reconstruction of the human blood–brain barrier in vitro reveals a pathogenic mechanism of APOE4 in pericytes von Blanchard, Joel W., Bula, Michael, Davila-Velderrain, Jose, Akay, Leyla Anne, Zhu, Lena, Frank, Alexander, Victor, Matheus B., Bonner, Julia Maeve, Mathys, Hansruedi, Lin, Yuan-Ta, Ko, Tak, Bennett, David A., Cam, Hugh P., Kellis, Manolis, Tsai, Li-Huei

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PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions von Lin, Michael F., Jungreis, Irwin, Kellis, Manolis

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Regulatory genomic circuitry of human disease loci by integrative epigenomics von Boix, Carles A., James, Benjamin T., Park, Yongjin P., Meuleman, Wouter, Kellis, Manolis

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Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo von Rouskin, Silvi, Zubradt, Meghan, Washietl, Stefan, Kellis, Manolis, Weissman, Jonathan S.

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FTO Obesity Variant Circuitry and Adipocyte Browning in Humans von Claussnitzer, Melina, Dankel, Simon N, Kim, Kyoung-Han, Quon, Gerald, Meuleman, Wouter, Haugen, Christine, Glunk, Viktoria, Sousa, Isabel S, Beaudry, Jacqueline L, Puviindran, Vijitha, Abdennur, Nezar A, Liu, Jannel, Svensson, Per-Arne, Hsu, Yi-Hsiang, Drucker, Daniel J, Mellgren, Gunnar, Hui, Chi-Chung, Hauner, Hans, Kellis, Manolis

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A multiresolution framework to characterize single-cell state landscapes von Mohammadi, Shahin, Davila-Velderrain, Jose, Kellis, Manolis

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Network deconvolution as a general method to distinguish direct dependencies in networks von Feizi, Soheil, Marbach, Daniel, Médard, Muriel, Kellis, Manolis

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Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease von Gjoneska, Elizabeta, Pfenning, Andreas R., Mathys, Hansruedi, Quon, Gerald, Kundaje, Anshul, Tsai, Li-Huei, Kellis, Manolis

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Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions von Ward, Lucas D., Kellis, Manolis

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High-throughput 5′ UTR engineering for enhanced protein production in non-viral gene therapies von Cao, Jicong, Novoa, Eva Maria, Zhang, Zhizhuo, Chen, William C. W., Liu, Dianbo, Choi, Gigi C. G., Wong, Alan S. L., Wehrspaun, Claudia, Kellis, Manolis, Lu, Timothy K.

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Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration von Menon, Madhvi, Mohammadi, Shahin, Davila-Velderrain, Jose, Goods, Brittany A., Cadwell, Tanina D., Xing, Yu, Stemmer-Rachamimov, Anat, Shalek, Alex K., Love, John Christopher, Kellis, Manolis, Hafler, Brian P.

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