The ecologist's field guide to sequence‐based identification of biodiversity von Creer, Simon, Deiner, Kristy, Frey, Serita, Porazinska, Dorota, Taberlet, Pierre, Thomas, W. Kelley, Potter, Caitlin, Bik, Holly M., Freckleton, Robert

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Genetic drift, selection and the evolution of the mutation rate von Lynch, Michael, Ackerman, Matthew S., Gout, Jean-Francois, Long, Hongan, Sung, Way, Thomas, W. Kelley, Foster, Patricia L.

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Sequencing our way towards understanding global eukaryotic biodiversity von Bik, Holly M., Porazinska, Dorota L., Creer, Simon, Caporaso, J. Gregory, Knight, Rob, Thomas, W. Kelley

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RepeatFS: a file system providing reproducibility through provenance and automation von Westbrook, Anthony, Varki, Elizabeth, Thomas, W Kelley

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Dramatic shifts in benthic microbial eukaryote communities following the Deepwater Horizon oil spill von Bik, Holly M, Halanych, Kenneth M, Sharma, Jyotsna, Thomas, W Kelley

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Nematode mitochondrial metagenomics: A new tool for biodiversity analysis von Gendron, Eli M., Sevigny, Joseph L., Byiringiro, Innocent, Thomas, W. Kelley, Powers, Thomas O., Porazinska, Dorota L.

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The Ecoresponsive Genome of "Daphnia pulex" von Colbourne, John K., Pfrender, Michael E., Gilbert, Donald, Thomas, W. Kelley, Tucker, Abraham, Oakley, Todd H., Tokishita, Shinichi, Aerts, Andrea, Arnold, Georg J., Basu, Malay Kumar, Bauer, Darren J., Cáceres, Carla E., Carmel, Liran, Casola, Claudio, Choi, Jeong-Hyeon, Detter, John C., Dong, Qunfeng, Dusheyko, Serge, Eads, Brian D., Fröhlich, Thomas, Geiler-Samerotte, Kerry A., Gerlach, Daniel, Hatcher, Phil, Jogdeo, Sanjuro, Krijgsveld, Jeroen, Kriventseva, Evgenia V., Kültz, Dietmar, Laforsch, Christian, Lindquist, Erika, Lopez, Jacqueline, Manak, J. Robert, Muller, Jean, Pangilinan, Jasmyn, Patwardhan, Rupali P., Pitluck, Samuel, Pritham, Ellen J., Rechtsteiner, Andreas, Rho, Mina, Rogozin, Igor B., Sakarya, Onur, Salamov, Asaf, Schaack, Sarah, Shapiro, Harris, Shiga, Yasuhiro, Skalitzky, Courtney, Smith, Zachary, Souvorov, Alexander, Sung, Way, Tang, Zuojian, Tsuchiya, Dai, Tu, Hank, Vos, Harmjan, Wang, Mei, Wolf, Yuri I., Yamagata, Hideo, Yamada, Takuji, Ye, Yuzhen, Shaw, Joseph R., Andrews, Justen, Crease, Teresa J., Tang, Haixu, Lucas, Susan M., Robertson, Hugh M., Bork, Peer, Koonin, Eugene V., Zdobnov, Evgeny M., Grigoriev, Igor V., Lynch, Michael, Boore, Jeffrey L.

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Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes von Fonseca, Vera G, Carvalho, Gary R, Nichols, Ben, Quince, Christopher, Johnson, Harriet F, Neill, Simon P, Lambshead, John D, Thomas, W. Kelley, Power, Deborah M, Creer, Simon

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Extraordinary genome stability in the ciliate Paramecium tetraurelia von Sung, Way, Tucker, Abraham E, Doak, Thomas G, Choi, Eunjin, Thomas, W. Kelley, Lynch, Michael

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Large-scale detection of in vivo transcription errors von Gout, Jean-François, Thomas, W.Kelley, Smith, Zachary, Okamoto, Kazufusa, Lynch, Michael

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genome-wide view of the spectrum of spontaneous mutations in yeast von Lynch, Michael, Sung, Way, Morris, Krystalynne, Coffey, Nicole, Landry, Christian R, Dopman, Erik B, Dickinson, W. Joseph, Okamoto, Kazufusa, Kulkarni, Shilpa, Hartl, Daniel L, Thomas, W. Kelley

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Intra-genomic variation in the ribosomal repeats of nematodes von Bik, Holly M, Fournier, David, Sung, Way, Bergeron, R Daniel, Thomas, W Kelley

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Extensive, Recent Intron Gains in Daphnia Populations von Li, Wenli, Tucker, Abraham E., Sung, Way, Thomas, W. Kelley, Lynch, Michael

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Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments von BIK, HOLLY M., SUNG, WAY, DE LEY, PAUL, BALDWIN, JAMES G., SHARMA, JYOTSNA, ROCHA-OLIVARES, AXAYÁCATL, THOMAS, W. KELLEY

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Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity von PORAZINSKA, DOROTA L, GIBLIN-DAVIS, ROBIN M, FALLER, LINA, FARMERIE, WILLIAM, KANZAKI, NATSUMI, MORRIS, KRYSTALYNNE, POWERS, THOMAS O, TUCKER, ABRAHAM E, SUNG, WAY, THOMAS, W. KELLEY

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Assessing the consequences of denoising marker-based metagenomic data von Gaspar, John M, Thomas, W Kelley

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The Transition From Stochastic to Deterministic Bacterial Community Assembly During Permafrost Thaw Succession von Doherty, Stacey Jarvis, Barbato, Robyn A, Grandy, A Stuart, Thomas, W Kelley, Monteux, Sylvain, Dorrepaal, Ellen, Johansson, Margareta, Ernakovich, Jessica G

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A New Reference Genome Assembly for the Microcrustacean Daphnia pulex von Ye, Zhiqiang, Xu, Sen, Spitze, Ken, Asselman, Jana, Jiang, Xiaoqian, Ackerman, Matthew S, Lopez, Jacqueline, Harker, Brent, Raborn, R Taylor, Thomas, W Kelley, Ramsdell, Jordan, Pfrender, Michael E, Lynch, Michael

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Nematode spatial and ecological patterns from tropical and temperate rainforests von Porazinska, Dorota L, Giblin-Davis, Robin M, Powers, Thomas O, Thomas, W Kelley

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High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome von Denver, Dee R, Morris, Krystalynne, Lynch, Michael, Thomas, W. Kelley

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