An integrated map of genetic variation from 1,092 human genomes von Abecasis, Goncalo R, Auton, Adam, Brooks, Lisa D, DePristo, Mark A, Durbin, Richard M, Handsaker, Robert E, Kang, Hyun Min, Marth, Gabor T, McVean, Gil A

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Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel von Delaneau, Olivier, Marchini, Jonathan

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Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics von Khurana, Ekta, Fu, Yao, Colonna, Vincenza, Mu, Xinmeng Jasmine, Kang, Hyun Min, Lappalainen, Tuuli, Sboner, Andrea, Lochovsky, Lucas, Chen, Jieming, Harmanci, Arif, Das, Jishnu, Abyzov, Alexej, Balasubramanian, Suganthi, Beal, Kathryn, Chakravarty, Dimple, Challis, Daniel, Chen, Yuan, Clarke, Declan, Clarke, Laura, Cunningham, Fiona, Evani, Uday S., Flicek, Paul, Fragoza, Robert, Garrison, Erik, Gibbs, Richard, Gümüş, Zeynep H., Herrero, Javier, Kitabayashi, Naoki, Kong, Yong, Lage, Kasper, Liluashvili, Vaja, Lipkin, Steven M., MacArthur, Daniel G., Marth, Gabor, Muzny, Donna, Pers, Tune H., Ritchie, Graham R. S., Rosenfeld, Jeffrey A., Sisu, Cristina, Wei, Xiaomu, Wilson, Michael, Xue, Yali, Yu, Fuli, Dermitzakis, Emmanouil T., Yu, Haiyuan, Rubin, Mark A., Tyler-Smith, Chris, Gerstein, Mark

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The Type 2 Diabetes Knowledge Portal: An open access genetic resource dedicated to type 2 diabetes and related traits von Massung, Jeffrey, Jang, Dongkeun, Gilbert, Clint, Hoang, Quy, Duby, Marc, Nguyen, Trang, Smadbeck, Patrick, Alexander, Benjamin R., Carmichael, Mary, Dornbos, Peter, Green, Todd, Ji, Yue, Kluge, Alexandria, McMahon, Aoife C., Mercader, Josep M., Sengupta, Sebanti, Spalding, Dylan, Abecasis, Gonçalo, Akolkar, Beena, Below, Jennifer E., Blangero, John, Boehnke, Michael, Bokvist, Krister, Bottinger, Erwin, Bowden, Donald, Burtt, Noël P., Cebola, Inês, Chambers, John, Ida Chen, Yii-Der, Chu, Audrey Y., Claussnitzer, Melina, Cox, Nancy J., Dong, Duc, Duggirala, Ravindranath, Ferrer, Jorge, Flannick, Jason, Flicek, Paul, Florez, Jose C., Frazer, Kelly A., Gilbert, Clint, Gloyn, Anna L., Hanis, Craig L., Hanson, Robert, Hoang, Quy, Im, Hae Kyung, Iqbal, Sidra, Jacobs, Suzanne B.R., Kamphaus, Tania, Keane, Thomas M., Kluge, Alexandria, Lange, Leslie A., Liu, Ching-Ti, Loos, Ruth J.F., Ma, Ronald Ching-wan, Massung, Jeffrey, Maurano, Matthew T., McCarthy, Mark I., McVean, Gil, Meigs, James B., Mitchell, Braxton, Narendra, Sharvari, Parker, Stephen C.J., Parrado, Antonio, Pearson, Ewan R., Redline, Susan, Ren, Bing, Rich, Stephen S., Rotter, Jerome I., Ruetten, Hartmut, Salem, Rany M., Sander, Maike, Sanghera, Dharambir, Scott, Laura J., Sengupta, Sebanti, Sladek, Robert, Small, Kerrin, Stringham, Heather M., Sun, Ying, ’t Hart, Leen M., Taliun, Daniel, Thomas, Melissa K., Todd, Jennifer A., Udler, Miriam S., von Grotthuss, Marcin, Wan, Andre, Wholley, David, Yuksel, Kaan, Zaghloul, Norann A., Thomas, Melissa K., Akolkar, Beena, Cherkas, Andriy, Chu, Audrey Y., Kamphaus, Tania Nayak, Parsa, Afshin, Ruetten, Hartmut, Wholley, David, Zaghloul, Norann A., Altshuler, David, Florez, Jose C., Boehnke, Michael

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The functional spectrum of low-frequency coding variation von Marth, Gabor T, Yu, Fuli, Indap, Amit R, Garimella, Kiran, Gravel, Simon, Leong, Wen Fung, Tyler-Smith, Chris, Bainbridge, Matthew, Blackwell, Tom, Zheng-Bradley, Xiangqun, Chen, Yuan, Challis, Danny, Clarke, Laura, Ball, Edward V, Cibulskis, Kristian, Cooper, David N, Fulton, Bob, Hartl, Chris, Koboldt, Dan, Muzny, Donna, Smith, Richard, Sougnez, Carrie, Stewart, Chip, Ward, Alistair, Yu, Jin, Xue, Yali, Altshuler, David, Bustamante, Carlos D, Clark, Andrew G, Daly, Mark, DePristo, Mark, Flicek, Paul, Gabriel, Stacey, Mardis, Elaine, Palotie, Aarno, Gibbs, Richard

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Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences von Colonna, Vincenza, Ayub, Qasim, Chen, Yuan, Pagani, Luca, Luisi, Pierre, Pybus, Marc, Garrison, Erik, Xue, Yali, Tyler-Smith, Chris, Abecasis, Goncalo R, Auton, Adam, Brooks, Lisa D, DePristo, Mark A, Durbin, Richard M, Handsaker, Robert E, Kang, Hyun Min, Marth, Gabor T, McVean, Gil A

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The BRAF Pseudogene Functions as a Competitive Endogenous RNA and Induces Lymphoma In Vivo von Karreth, Florian A., Reschke, Markus, Ruocco, Anna, Ng, Christopher, Chapuy, Bjoern, Léopold, Valentine, Sjoberg, Marcela, Keane, Thomas M., Verma, Akanksha, Ala, Ugo, Tay, Yvonne, Wu, David, Seitzer, Nina, Velasco-Herrera, Martin Del Castillo, Bothmer, Anne, Fung, Jacqueline, Langellotto, Fernanda, Rodig, Scott J., Elemento, Olivier, Shipp, Margaret A., Adams, David J., Chiarle, Roberto, Pandolfi, Pier Paolo

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The European Variation Archive: a FAIR resource of genomic variation for all species von Cezard, Timothe, Cunningham, Fiona, Hunt, Sarah E, Koylass, Baron, Kumar, Nitin, Saunders, Gary, Shen, April, Silva, Andres F, Tsukanov, Kirill, Venkataraman, Sundararaman, Flicek, Paul, Parkinson, Helen, Keane, Thomas M

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RetroSeq: transposable element discovery from next-generation sequencing data von Keane, Thomas M, Wong, Kim, Adams, David J

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The growing need for controlled data access models in clinical proteomics and metabolomics von Keane, Thomas M., O’Donovan, Claire, Vizcaíno, Juan Antonio

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ABACAS: algorithm-based automatic contiguation of assembled sequences von Assefa, Samuel, Keane, Thomas M., Otto, Thomas D., Newbold, Chris, Berriman, Matthew

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The mutational landscapes of genetic and chemical models of Kras-driven lung cancer von Westcott, Peter M. K., Halliwill, Kyle D., To, Minh D., Rashid, Mamunur, Rust, Alistair G., Keane, Thomas M., Delrosario, Reyno, Jen, Kuang-Yu, Gurley, Kay E., Kemp, Christopher J., Fredlund, Erik, Quigley, David A., Adams, David J., Balmain, Allan

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Genome Sequencing Reveals Loci under Artificial Selection that Underlie Disease Phenotypes in the Laboratory Rat von Atanur, Santosh S., Diaz, Ana Garcia, Maratou, Klio, Sarkis, Allison, Rotival, Maxime, Game, Laurence, Tschannen, Michael R., Kaisaki, Pamela J., Otto, Georg W., Ma, Man Chun John, Keane, Thomas M., Hummel, Oliver, Saar, Kathrin, Chen, Wei, Guryev, Victor, Gopalakrishnan, Kathirvel, Garrett, Michael R., Joe, Bina, Citterio, Lorena, Bianchi, Giuseppe, McBride, Martin, Dominiczak, Anna, Adams, David J., Serikawa, Tadao, Flicek, Paul, Cuppen, Edwin, Hubner, Norbert, Petretto, Enrico, Gauguier, Dominique, Kwitek, Anne, Jacob, Howard, Aitman, Timothy J.

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De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms von Giordano, Francesca, Aigrain, Louise, Quail, Michael A, Coupland, Paul, Bonfield, James K, Davies, Robert M, Tischler, German, Jackson, David K, Keane, Thomas M, Li, Jing, Yue, Jia-Xing, Liti, Gianni, Durbin, Richard, Ning, Zemin

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POT1 loss-of-function variants predispose to familial melanoma von Robles-Espinoza, Carla Daniela, Harland, Mark, Ramsay, Andrew J, Aoude, Lauren G, Quesada, Víctor, Ding, Zhihao, Pooley, Karen A, Pritchard, Antonia L, Tiffen, Jessamy C, Petljak, Mia, Palmer, Jane M, Symmons, Judith, Johansson, Peter, Stark, Mitchell S, Gartside, Michael G, Snowden, Helen, Montgomery, Grant W, Martin, Nicholas G, Liu, Jimmy Z, Choi, Jiyeon, Makowski, Matthew, Brown, Kevin M, Dunning, Alison M, Keane, Thomas M, López-Otín, Carlos, Gruis, Nelleke A, Hayward, Nicholas K, Bishop, D Timothy, Newton-Bishop, Julia A, Adams, David J

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Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents von Halligan, Daniel L, Kousathanas, Athanasios, Ness, Rob W, Harr, Bettina, Eöry, Lél, Keane, Thomas M, Adams, David J, Keightley, Peter D

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Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations von Doran, Anthony G, Wong, Kim, Flint, Jonathan, Adams, David J, Hunter, Kent W, Keane, Thomas M

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Sequence-based characterization of structural variation in the mouse genome von Yalcin, Binnaz, Wong, Kim, Agam, Avigail, Goodson, Martin, Keane, Thomas M., Gan, Xiangchao, Nellåker, Christoffer, Goodstadt, Leo, Nicod, Jérôme, Bhomra, Amarjit, Hernandez-Pliego, Polinka, Whitley, Helen, Cleak, James, Dutton, Rebekah, Janowitz, Deborah, Mott, Richard, Adams, David J., Flint, Jonathan

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Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly von Wong, Kim, Keane, Thomas M, Stalker, James, Adams, David J

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The genomic landscape shaped by selection on transposable elements across 18 mouse strains von Nellåker, Christoffer, Keane, Thomas M, Yalcin, Binnaz, Wong, Kim, Agam, Avigail, Belgard, T Grant, Flint, Jonathan, Adams, David J, Frankel, Wayne N, Ponting, Chris P

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