Evolution of Pan-Genomes of Escherichia coli, Shigella spp., and Salmonella enterica von Gordienko, Evgeny N, Kazanov, Marat D, Gelfand, Mikhail S

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Glycidamide-induced hypermutation in yeast single-stranded DNA reveals a ubiquitous clock-like mutational motif in humans von Hudson, Kathleen M, Klimczak, Leszek J, Sterling, Joan F, Burkholder, Adam B, Kazanov, Marat D, Saini, Natalie, Mieczkowski, Piotr A, Gordenin, Dmitry A

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Predicting Structural Susceptibility of Proteins to Proteolytic Processing von Matveev, Evgenii V, Safronov, Vyacheslav V, Ponomarev, Gennady V, Kazanov, Marat D

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APOBEC-Induced Cancer Mutations Are Uniquely Enriched in Early-Replicating, Gene-Dense, and Active Chromatin Regions von Kazanov, Marat D., Roberts, Steven A., Polak, Paz, Stamatoyannopoulos, John, Klimczak, Leszek J., Gordenin, Dmitry A., Sunyaev, Shamil R.

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CleavPredict: A Platform for Reasoning about Matrix Metalloproteinases Proteolytic Events von Kumar, Sonu, Ratnikov, Boris I, Kazanov, Marat D, Smith, Jeffrey W, Cieplak, Piotr

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Genome-wide bioinformatics analysis of human protease capacity for proteolytic cleavage of the SARS-CoV-2 spike glycoprotein von Matveev, Evgenii V, Ponomarev, Gennady V, Kazanov, Marat D

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Genomic Reconstruction of the Transcriptional Regulatory Network in Bacillus subtilis von Leyn, Semen A, Kazanov, Marat D, Sernova, Natalia V, Ermakova, Ekaterina O, Novichkov, Pavel S, Rodionov, Dmitry A

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Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum von Kazanov, Marat D, Li, Xiaoqing, Gelfand, Mikhail S, Osterman, Andrei L, Rodionov, Dmitry A

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Glutamine versus ammonia utilization in the NAD synthetase family von De Ingeniis, Jessica, Kazanov, Marat D, Shatalin, Konstantin, Gelfand, Mikhail S, Osterman, Andrei L, Sorci, Leonardo

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Analysis of gene expression and mutation data points on contribution of transcription to the mutagenesis by APOBEC enzymes von Chervova, Almira, Fatykhov, Bulat, Koblov, Alexander, Shvarov, Evgeny, Preobrazhenskaya, Julia, Vinogradov, Dmitry, Ponomarev, Gennady V, Gelfand, Mikhail S, Kazanov, Marat D

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Structural Determinants of Limited Proteolysis von Kazanov, Marat D, Igarashi, Yoshinobu, Eroshkin, Alexey M, Cieplak, Piotr, Ratnikov, Boris, Zhang, Ying, Li, Zhanwen, Godzik, Adam, Osterman, Andrei L, Smith, Jeffrey W

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Correction: CleavPredict: A Platform for Reasoning about Matrix Metalloproteinases Proteolytic Events von Kumar, Sonu, Ratnikov, Boris I, Kazanov, Marat D, Smith, Jeffrey W, Cieplak, Piotr

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Genomics-guided analysis of NAD recycling yields functional elucidation of COG1058 as a new family of pyrophosphatases von Cialabrini, Lucia, Ruggieri, Silverio, Kazanov, Marat D, Sorci, Leonardo, Mazzola, Francesca, Orsomando, Giuseppe, Osterman, Andrei L, Raffaelli, Nadia

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RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria von Novichkov, Pavel S, Kazakov, Alexey E, Ravcheev, Dmitry A, Leyn, Semen A, Kovaleva, Galina Y, Sutormin, Roman A, Kazanov, Marat D, Riehl, William, Arkin, Adam P, Dubchak, Inna, Rodionov, Dmitry A

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Analysis of the abundance and diversity of RNA secondary structure elements in RNA viruses using the RNAsselem Python package von Kazanov, Fedor M., Matveev, Evgenii V., Ponomarev, Gennady V., Ivankov, Dmitry N., Kazanov, Marat D.

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Abundance and functional diversity of riboswitches in microbial communities von Kazanov, Marat D, Vitreschak, Alexey G, Gelfand, Mikhail S

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Evolution of Prokaryotic Genes by Shift of Stop Codons von Vakhrusheva, Anna A., Kazanov, Marat D., Mironov, Andrey A., Bazykin, Georgii A.

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Bioactive glycans in a microbiome-directed food for children with malnutrition von Hibberd, Matthew C., Webber, Daniel M., Rodionov, Dmitry A., Henrissat, Suzanne, Chen, Robert Y., Zhou, Cyrus, Lynn, Hannah M., Wang, Yi, Chang, Hao-Wei, Lee, Evan M., Lelwala-Guruge, Janaki, Kazanov, Marat D., Arzamasov, Aleksandr A., Leyn, Semen A., Lombard, Vincent, Terrapon, Nicolas, Henrissat, Bernard, Castillo, Juan J., Couture, Garret, Bacalzo, Nikita P., Chen, Ye, Lebrilla, Carlito B., Mostafa, Ishita, Das, Subhasish, Mahfuz, Mustafa, Barratt, Michael J., Osterman, Andrei L., Ahmed, Tahmeed, Gordon, Jeffrey I.

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Evolution of transcriptional regulation in closely related bacteria von Tsoy, Olga V, Pyatnitskiy, Mikhail A, Kazanov, Marat D, Gelfand, Mikhail S

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Classification of ANA HEp-2 slide images using morphological features of stained patterns von Ponomarev, Gennady V., Kazanov, Marat D.

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