Systematic analysis of dark and camouflaged genes reveals disease-relevant genes hiding in plain sight von Ebbert, Mark T W, Jensen, Tanner D, Jansen-West, Karen, Sens, Jonathon P, Reddy, Joseph S, Ridge, Perry G, Kauwe, John S K, Belzil, Veronique, Pregent, Luc, Carrasquillo, Minerva M, Keene, Dirk, Larson, Eric, Crane, Paul, Asmann, Yan W, Ertekin-Taner, Nilufer, Younkin, Steven G, Ross, Owen A, Rademakers, Rosa, Petrucelli, Leonard, Fryer, John D

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Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches von Ebbert, Mark T W, Wadsworth, Mark E, Staley, Lyndsay A, Hoyt, Kaitlyn L, Pickett, Brandon, Miller, Justin, Duce, John, Kauwe, John S K, Ridge, Perry G

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Alzheimer's disease: analyzing the missing heritability von Ridge, Perry G, Mukherjee, Shubhabrata, Crane, Paul K, Kauwe, John S K

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Codon Pairs are Phylogenetically Conserved: A comprehensive analysis of codon pairing conservation across the Tree of Life von Miller, Justin B., McKinnon, Lauren M., Whiting, Michael F., Kauwe, John S. K., Ridge, Perry G.

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TREM2 Variants in Alzheimer's Disease von Guerreiro, Rita, Wojtas, Aleksandra, Bras, Jose, Carrasquillo, Minerva, Rogaeva, Ekaterina, Majounie, Elisa, Cruchaga, Carlos, Sassi, Celeste, Kauwe, John S.K, Younkin, Steven, Hazrati, Lilinaz, Collinge, John, Pocock, Jennifer, Lashley, Tammaryn, Williams, Julie, Lambert, Jean-Charles, Amouyel, Philippe, Goate, Alison, Rademakers, Rosa, Morgan, Kevin, Powell, John, St. George-Hyslop, Peter, Singleton, Andrew, Hardy, John

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Fine-mapping of the human leukocyte antigen locus as a risk factor for Alzheimer disease: A case-control study von Steele, Natasha Z R, Carr, Jessie S, Bonham, Luke W, Geier, Ethan G, Damotte, Vincent, Miller, Zachary A, Desikan, Rahul S, Boehme, Kevin L, Mukherjee, Shubhabrata, Crane, Paul K, Kauwe, John S K, Kramer, Joel H, Miller, Bruce L, Coppola, Giovanni, Hollenbach, Jill A, Huang, Yadong, Yokoyama, Jennifer S

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Genome-wide association study identifies four novel loci associated with Alzheimer’s endophenotypes and disease modifiers von Deming, Yuetiva, Li, Zeran, Kapoor, Manav, Harari, Oscar, Del-Aguila, Jorge L., Black, Kathleen, Carrell, David, Cai, Yefei, Fernandez, Maria Victoria, Budde, John, Ma, Shengmei, Saef, Benjamin, Howells, Bill, Huang, Kuan-lin, Bertelsen, Sarah, Fagan, Anne M., Holtzman, David M., Morris, John C., Kim, Sungeun, Saykin, Andrew J., De Jager, Philip L., Albert, Marilyn, Moghekar, Abhay, O’Brien, Richard, Riemenschneider, Matthias, Petersen, Ronald C., Blennow, Kaj, Zetterberg, Henrik, Minthon, Lennart, Van Deerlin, Vivianna M., Lee, Virginia Man-Yee, Shaw, Leslie M., Trojanowski, John Q., Schellenberg, Gerard, Haines, Jonathan L., Mayeux, Richard, Pericak-Vance, Margaret A., Farrer, Lindsay A., Peskind, Elaine R., Li, Ge, Di Narzo, Antonio F., Kauwe, John S. K., Goate, Alison M., Cruchaga, Carlos

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A comprehensive analysis of the phylogenetic signal in ramp sequences in 211 vertebrates von McKinnon, Lauren M., Miller, Justin B., Whiting, Michael F., Kauwe, John S. K., Ridge, Perry G.

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Genetic analysis of quantitative phenotypes in AD and MCI: imaging, cognition and biomarkers von Shen, Li, Thompson, Paul M., Potkin, Steven G., Bertram, Lars, Farrer, Lindsay A., Foroud, Tatiana M., Green, Robert C., Hu, Xiaolan, Huentelman, Matthew J., Kim, Sungeun, Kauwe, John S. K., Li, Qingqin, Liu, Enchi, Macciardi, Fabio, Moore, Jason H., Munsie, Leanne, Nho, Kwangsik, Ramanan, Vijay K., Risacher, Shannon L., Stone, David J., Swaminathan, Shanker, Toga, Arthur W., Weiner, Michael W., Saykin, Andrew J.

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Distinct clinicopathologic clusters of persons with TDP-43 proteinopathy von Katsumata, Yuriko, Abner, Erin L., Karanth, Shama, Teylan, Merilee A., Mock, Charles N., Cykowski, Matthew D., Lee, Edward B., Boehme, Kevin L., Mukherjee, Shubhabrata, Kauwe, John S. K., Kryscio, Richard J., Schmitt, Frederick A., Fardo, David W., Nelson, Peter T.

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Cerebrospinal fluid APOE levels: an endophenotype for genetic studies for Alzheimer's disease von Cruchaga, Carlos, Kauwe, John S K, Nowotny, Petra, Bales, Kelly, Pickering, Eve H, Mayo, Kevin, Bertelsen, Sarah, Hinrichs, Anthony, Fagan, Anne M, Holtzman, David M, Morris, John C, Goate, Alison M

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Analysis of genes (TMEM106B, GRN, ABCC9, KCNMB2, and APOE) implicated in risk for LATE-NC and hippocampal sclerosis provides pathogenetic insights: a retrospective genetic associat... von Dugan, Adam J., Nelson, Peter T., Katsumata, Yuriko, Shade, Lincoln M. P., Boehme, Kevin L., Teylan, Merilee A., Cykowski, Matthew D., Mukherjee, Shubhabrata, Kauwe, John S. K., Hohman, Timothy J., Schneider, Julie A., Fardo, David W.

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Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation von Kauwe, John S K, Bailey, Matthew H, Ridge, Perry G, Perry, Rachel, Wadsworth, Mark E, Hoyt, Kaitlyn L, Staley, Lyndsay A, Karch, Celeste M, Harari, Oscar, Cruchaga, Carlos, Ainscough, Benjamin J, Bales, Kelly, Pickering, Eve H, Bertelsen, Sarah, Fagan, Anne M, Holtzman, David M, Morris, John C, Goate, Alison M

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SNPs associated with cerebrospinal fluid phospho-tau levels influence rate of decline in Alzheimer's disease von Cruchaga, Carlos, Kauwe, John S K, Mayo, Kevin, Spiegel, Noah, Bertelsen, Sarah, Nowotny, Petra, Shah, Aarti R, Abraham, Richard, Hollingworth, Paul, Harold, Denise, Owen, Michael M, Williams, Julie, Lovestone, Simon, Peskind, Elaine R, Li, Ge, Leverenz, James B, Galasko, Douglas, Morris, John C, Fagan, Anne M, Holtzman, David M, Goate, Alison M

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Population-based Analysis of Alzheimer’s Disease Risk Alleles Implicates Genetic Interactions von Ebbert, Mark T.W, Ridge, Perry G, Wilson, Andrew R, Sharp, Aaron R, Bailey, Matthew, Norton, Maria C, Tschanz, JoAnn T, Munger, Ronald G, Corcoran, Christopher D, Kauwe, John S.K

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Atypical chemokine receptor ACKR2-V41A has decreased CCL2 binding, scavenging, and activation, supporting sustained inflammation and increased Alzheimer’s disease risk von Murcia, Josue D. Gonzalez, Weinert, Allen, Freitas, Claudia M. Tellez, Arens, Daniel K., Ferrel, Meganne N., Grose, Julianne H., Ridge, Perry G., Wilson, Eric, Kauwe, John S. K., Weber, K. Scott

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Locus specific endogenous retroviral expression associated with Alzheimer's disease von Dawson, Tyson, Rentia, Uzma, Sanford, Jessie, Cruchaga, Carlos, Kauwe, John S K, Crandall, Keith A

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Missense variant in TREML2 protects against Alzheimer's disease von Benitez, Bruno A, Jin, Sheng Chih, Guerreiro, Rita, Graham, Rob, Lord, Jenny, Harold, Denise, Sims, Rebecca, Lambert, Jean-Charles, Gibbs, J. Raphael, Bras, Jose, Sassi, Celeste, Harari, Oscar, Bertelsen, Sarah, Lupton, Michelle K, Powell, John, Bellenguez, Celine, Brown, Kristelle, Medway, Christopher, Haddick, Patrick CG, van der Brug, Marcel P, Bhangale, Tushar, Ortmann, Ward, Behrens, Tim, Mayeux, Richard, Pericak-Vance, Margaret A, Farrer, Lindsay A, Schellenberg, Gerard D, Haines, Jonathan L, Turton, Jim, Braae, Anne, Barber, Imelda, Fagan, Anne M, Holtzman, David M, Morris, John C, Williams, Julie, Kauwe, John S.K, Amouyel, Philippe, Morgan, Kevin, Singleton, Andy, Hardy, John, Goate, Alison M, Cruchaga, Carlos

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Fine mapping of genetic variants in BIN1, CLU, CR1 and PICALM for association with cerebrospinal fluid biomarkers for Alzheimer's disease von Kauwe, John S K, Cruchaga, Carlos, Karch, Celeste M, Sadler, Brooke, Lee, Mo, Mayo, Kevin, Latu, Wayne, Su'a, Manti, Fagan, Anne M, Holtzman, David M, Morris, John C, Goate, Alison M

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Mitochondrial genomic analysis of late onset Alzheimer's disease reveals protective haplogroups H6A1A/H6A1B: the Cache County Study on Memory in Aging von Ridge, Perry G, Maxwell, Taylor J, Corcoran, Christopher D, Norton, Maria C, Tschanz, Joann T, O'Brien, Elizabeth, Kerber, Richard A, Cawthon, Richard M, Munger, Ronald G, Kauwe, John S K

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