Systematic analysis of dark and camouflaged genes reveals disease-relevant genes hiding in plain sight von Ebbert, Mark T W, Jensen, Tanner D, Jansen-West, Karen, Sens, Jonathon P, Reddy, Joseph S, Ridge, Perry G, Kauwe, John S K, Belzil, Veronique, Pregent, Luc, Carrasquillo, Minerva M, Keene, Dirk, Larson, Eric, Crane, Paul, Asmann, Yan W, Ertekin-Taner, Nilufer, Younkin, Steven G, Ross, Owen A, Rademakers, Rosa, Petrucelli, Leonard, Fryer, John D

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Codon Pairs are Phylogenetically Conserved: A comprehensive analysis of codon pairing conservation across the Tree of Life von Miller, Justin B., McKinnon, Lauren M., Whiting, Michael F., Kauwe, John S. K., Ridge, Perry G.

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Fine-mapping of the human leukocyte antigen locus as a risk factor for Alzheimer disease: A case-control study von Steele, Natasha Z R, Carr, Jessie S, Bonham, Luke W, Geier, Ethan G, Damotte, Vincent, Miller, Zachary A, Desikan, Rahul S, Boehme, Kevin L, Mukherjee, Shubhabrata, Crane, Paul K, Kauwe, John S K, Kramer, Joel H, Miller, Bruce L, Coppola, Giovanni, Hollenbach, Jill A, Huang, Yadong, Yokoyama, Jennifer S

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Genetic analysis of quantitative phenotypes in AD and MCI: imaging, cognition and biomarkers von Shen, Li, Thompson, Paul M., Potkin, Steven G., Bertram, Lars, Farrer, Lindsay A., Foroud, Tatiana M., Green, Robert C., Hu, Xiaolan, Huentelman, Matthew J., Kim, Sungeun, Kauwe, John S. K., Li, Qingqin, Liu, Enchi, Macciardi, Fabio, Moore, Jason H., Munsie, Leanne, Nho, Kwangsik, Ramanan, Vijay K., Risacher, Shannon L., Stone, David J., Swaminathan, Shanker, Toga, Arthur W., Weiner, Michael W., Saykin, Andrew J.

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A comprehensive analysis of the phylogenetic signal in ramp sequences in 211 vertebrates von McKinnon, Lauren M., Miller, Justin B., Whiting, Michael F., Kauwe, John S. K., Ridge, Perry G.

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Analysis of genes (TMEM106B, GRN, ABCC9, KCNMB2, and APOE) implicated in risk for LATE-NC and hippocampal sclerosis provides pathogenetic insights: a retrospective genetic associat... von Dugan, Adam J., Nelson, Peter T., Katsumata, Yuriko, Shade, Lincoln M. P., Boehme, Kevin L., Teylan, Merilee A., Cykowski, Matthew D., Mukherjee, Shubhabrata, Kauwe, John S. K., Hohman, Timothy J., Schneider, Julie A., Fardo, David W.

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Alzheimer's disease: analyzing the missing heritability von Ridge, Perry G, Mukherjee, Shubhabrata, Crane, Paul K, Kauwe, John S K

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SNPs associated with cerebrospinal fluid phospho-tau levels influence rate of decline in Alzheimer's disease von Cruchaga, Carlos, Kauwe, John S K, Mayo, Kevin, Spiegel, Noah, Bertelsen, Sarah, Nowotny, Petra, Shah, Aarti R, Abraham, Richard, Hollingworth, Paul, Harold, Denise, Owen, Michael M, Williams, Julie, Lovestone, Simon, Peskind, Elaine R, Li, Ge, Leverenz, James B, Galasko, Douglas, Morris, John C, Fagan, Anne M, Holtzman, David M, Goate, Alison M

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Fine mapping of genetic variants in BIN1, CLU, CR1 and PICALM for association with cerebrospinal fluid biomarkers for Alzheimer's disease von Kauwe, John S K, Cruchaga, Carlos, Karch, Celeste M, Sadler, Brooke, Lee, Mo, Mayo, Kevin, Latu, Wayne, Su'a, Manti, Fagan, Anne M, Holtzman, David M, Morris, John C, Goate, Alison M

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Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches von Ebbert, Mark T W, Wadsworth, Mark E, Staley, Lyndsay A, Hoyt, Kaitlyn L, Pickett, Brandon, Miller, Justin, Duce, John, Kauwe, John S K, Ridge, Perry G

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TREM2 Variants in Alzheimer's Disease von Guerreiro, Rita, Wojtas, Aleksandra, Bras, Jose, Carrasquillo, Minerva, Rogaeva, Ekaterina, Majounie, Elisa, Cruchaga, Carlos, Sassi, Celeste, Kauwe, John S.K, Younkin, Steven, Hazrati, Lilinaz, Collinge, John, Pocock, Jennifer, Lashley, Tammaryn, Williams, Julie, Lambert, Jean-Charles, Amouyel, Philippe, Goate, Alison, Rademakers, Rosa, Morgan, Kevin, Powell, John, St. George-Hyslop, Peter, Singleton, Andrew, Hardy, John

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Mitochondrial genomic analysis of late onset Alzheimer's disease reveals protective haplogroups H6A1A/H6A1B: the Cache County Study on Memory in Aging von Ridge, Perry G, Maxwell, Taylor J, Corcoran, Christopher D, Norton, Maria C, Tschanz, Joann T, O'Brien, Elizabeth, Kerber, Richard A, Cawthon, Richard M, Munger, Ronald G, Kauwe, John S K

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Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels von Maxwell, Taylor J, Corcoran, Chris, Del-Aguila, Jorge L, Budde, John P, Deming, Yuetiva, Cruchaga, Carlos, Goate, Alison M, Kauwe, John S K

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Mitochondrial haplotypes associated with biomarkers for Alzheimer's disease von Ridge, Perry G, Koop, Andre, Maxwell, Taylor J, Bailey, Matthew H, Swerdlow, Russell H, Kauwe, John S K, Honea, Robyn A

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Alzheimer’s disease risk variants show association with cerebrospinal fluid amyloid beta von Kauwe, John S. K., Wang, Jun, Mayo, Kevin, Morris, John C., Fagan, Anne M., Holtzman, David M., Goate, Alison M.

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Single nucleotide polymorphism discovery in cutthroat trout subspecies using genome reduction, barcoding, and 454 pyro-sequencing von Houston, Derek D, Elzinga, David B, Maughan, Peter J, Smith, Scott M, Kauwe, John S K, Evans, R Paul, Stinger, Ryan B, Shiozawa, Dennis K

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Genome-wide association study identifies four novel loci associated with Alzheimer’s endophenotypes and disease modifiers von Deming, Yuetiva, Li, Zeran, Kapoor, Manav, Harari, Oscar, Del-Aguila, Jorge L., Black, Kathleen, Carrell, David, Cai, Yefei, Fernandez, Maria Victoria, Budde, John, Ma, Shengmei, Saef, Benjamin, Howells, Bill, Huang, Kuan-lin, Bertelsen, Sarah, Fagan, Anne M., Holtzman, David M., Morris, John C., Kim, Sungeun, Saykin, Andrew J., De Jager, Philip L., Albert, Marilyn, Moghekar, Abhay, O’Brien, Richard, Riemenschneider, Matthias, Petersen, Ronald C., Blennow, Kaj, Zetterberg, Henrik, Minthon, Lennart, Van Deerlin, Vivianna M., Lee, Virginia Man-Yee, Shaw, Leslie M., Trojanowski, John Q., Schellenberg, Gerard, Haines, Jonathan L., Mayeux, Richard, Pericak-Vance, Margaret A., Farrer, Lindsay A., Peskind, Elaine R., Li, Ge, Di Narzo, Antonio F., Kauwe, John S. K., Goate, Alison M., Cruchaga, Carlos

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Variation in MAPT is associated with cerebrospinal fluid tau levels in the presence of amyloid-beta deposition von Kauwe, John S.K, Cruchaga, Carlos, Mayo, Kevin, Fenoglio, Chiara, Bertelsen, Sarah, Nowotny, Petra, Galimberti, Daniela, Scarpini, Elio, Morris, John C, Fagan, Anne M, Holtzman, David M, Goate, Alison M

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DAPK1 variants are associated with Alzheimer's disease and allele-specific expression von Li, Yonghong, Grupe, Andrew, Rowland, Charles, Nowotny, Petra, Kauwe, John S.K., Smemo, Scott, Hinrichs, Anthony, Tacey, Kristina, Toombs, Timothy A., Kwok, Shirley, Catanese, Joseph, White, Thomas J., Maxwell, Taylor J., Hollingworth, Paul, Abraham, Richard, Rubinsztein, David C., Brayne, Carol, Wavrant-De Vrièze, Fabienne, Hardy, John, O'Donovan, Michael, Lovestone, Simon, Morris, John C., Thal, Leon J., Owen, Michael, Williams, Julie, Goate, Alison

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Cerebrospinal fluid APOE levels: an endophenotype for genetic studies for Alzheimer's disease von Cruchaga, Carlos, Kauwe, John S K, Nowotny, Petra, Bales, Kelly, Pickering, Eve H, Mayo, Kevin, Bertelsen, Sarah, Hinrichs, Anthony, Fagan, Anne M, Holtzman, David M, Morris, John C, Goate, Alison M

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