Reoccurring Escherichia coli O157:H7 Strain Linked to Leafy Greens–Associated Outbreaks, 2016–2019 von Chen, Jessica C, Patel, Kane, Smith, Peyton A, Vidyaprakash, Eshaw, Snyder, Caroline, Tagg, Kaitlin A, Webb, Hattie E, Schroeder, Morgan N, Katz, Lee S, Rowe, Lori A, Howard, Dakota, Griswold, Taylor, Lindsey, Rebecca L, Carleton, Heather A

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Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016 von Pattabiraman, Vaishnavi, Katz, Lee S, Chen, Jessica C, McCullough, Andre E, Trees, Eija

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Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics von Lindsey, Rebecca L, Gladney, Lori M, Huang, Andrew D, Griswold, Taylor, Katz, Lee S, Dinsmore, Blake A, Im, Monica S, Kucerova, Zuzana, Smith, Peyton A, Lane, Charlotte, Carleton, Heather A

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Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya von Ochieng, Caroline, Chen, Jessica C., Osita, Mike Powel, Katz, Lee S., Griswold, Taylor, Omballa, Victor, Ng’eno, Eric, Ouma, Alice, Wamola, Newton, Opiyo, Christine, Achieng, Loicer, Munywoki, Patrick K., Hendriksen, Rene S., Freeman, Molly, Mikoleit, Matthew, Juma, Bonventure, Bigogo, Godfrey, Mintz, Eric, Verani, Jennifer R., Hunsperger, Elizabeth, Carleton, Heather A.

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Characterization of a Nonagglutinating Toxigenic Vibrio cholerae Isolate von Gladney, Lori M, Griswold, Taylor, Turnsek, Maryann, Im, Monica S, Parsons, Michele M B, Katz, Lee S, Tarr, Cheryl L, Lee, Christine C

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Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids von Loh, Yong-Hwee E, Katz, Lee S, Mims, Meryl C, Kocher, Thomas D, Yi, Soojin V, Streelman, J Todd

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Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti von Katz, Lee S, Petkau, Aaron, Beaulaurier, John, Tyler, Shaun, Antonova, Elena S, Turnsek, Maryann A, Guo, Yan, Wang, Susana, Paxinos, Ellen E, Orata, Fabini, Gladney, Lori M, Stroika, Steven, Folster, Jason P, Rowe, Lori, Freeman, Molly M, Knox, Natalie, Frace, Mike, Boncy, Jacques, Graham, Morag, Hammer, Brian K, Boucher, Yan, Bashir, Ali, Hanage, William P, Van Domselaar, Gary, Tarr, Cheryl L

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Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks von Wagner, Darlene D., Carleton, Heather A., Trees, Eija, Katz, Lee S.

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Haemophilus haemolyticus Isolates Causing Clinical Disease von ANDERSON, Raydel, XIN WANG, BRIERE, Elizabeth C, KATZ, Lee S, COHN, Amanda C, CLARK, Thomas A, MESSONNIER, Nancy E, MAYER, Leonard W

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Genome Sequences for Six Rhodanobacter Strains, Isolated from Soils and the Terrestrial Subsurface, with Variable Denitrification Capabilities von Kostka, Joel E, Green, Stefan J, Rishishwar, Lavanya, Prakash, Om, Katz, Lee S, Mariño-Ramírez, Leonardo, Jordan, I. King, Munk, Christine, Ivanova, Natalia, Mikhailova, Natalia, Watson, David B, Brown, Steven D, Palumbo, Anthony V, Brooks, Scott C

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Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance von Timme, Ruth E, Rand, Hugh, Shumway, Martin, Trees, Eija K, Simmons, Mustafa, Agarwala, Richa, Davis, Steven, Tillman, Glenn E, Defibaugh-Chavez, Stephanie, Carleton, Heather A, Klimke, William A, Katz, Lee S

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Genome Sequences of Hemolytic and Nonhemolytic Listeria innocua Strains from Human, Food, and Environmental Sources von McIntosh, Tori, Kucerova, Zuzana, Katz, Lee S, Lilley, Cullen M, Rowe, Lori A, Unoarumhi, Yvette, Batra, Dhwani, Burnett, Elton, Smikle, Monica, Lee, Christine

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Benchmark datasets for SARS-CoV-2 surveillance bioinformatics von Xiaoli, Lingzi, Hagey, Jill V, Park, Daniel J, Gulvik, Christopher A, Young, Erin L, Alikhan, Nabil-Fareed, Lawsin, Adrian, Hassell, Norman, Knipe, Kristen, Oakeson, Kelly F, Retchless, Adam C, Shakya, Migun, Lo, Chien-Chi, Chain, Patrick, Page, Andrew J, Metcalf, Benjamin J, Su, Michelle, Rowell, Jessica, Vidyaprakash, Eshaw, Paden, Clinton R, Huang, Andrew D, Roellig, Dawn, Patel, Ketan, Winglee, Kathryn, Weigand, Michael R, Katz, Lee S

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Environmental surveillance for toxigenic Vibrio cholerae in surface waters of Haiti von Kahler, Amy M, Haley, Bradd J, Chen, Arlene, Mull, Bonnie J, Tarr, Cheryl L, Turnsek, Maryann, Katz, Lee S, Humphrys, Michael S, Derado, Gordana, Freeman, Nicole, Boncy, Jacques, Colwell, Rita R, Huq, Anwar, Hill, Vincent R

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Evaluation of New Biomarker Genes for Differentiating Haemophilus influenzae from Haemophilus haemolyticus von JORDAN THEODORE, M, ANDERSON, Raydel D, MAYER, Leonard W, XIN WANG, KATZ, Lee S, VUONG, Jeni T, BELL, Melissa E, JUNI, Billie A, LOTHER, Sara A, LYNFIELD, Ruth, MACNEIL, Jessica R

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Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection von Azarian, Taj, Ali, Afsar, Johnson, Judith A, Mohr, David, Prosperi, Mattia, Veras, Nazle M, Jubair, Mohammed, Strickland, Samantha L, Rashid, Mohammad H, Alam, Meer T, Weppelmann, Thomas A, Katz, Lee S, Tarr, Cheryl L, Colwell, Rita R, Morris, Jr, J Glenn, Salemi, Marco

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Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation von Jackson, Brendan R., Tarr, Cheryl, Strain, Errol, Jackson, Kelly A., Conrad, Amanda, Carleton, Heather, Katz, Lee S., Stroika, Steven, Gould, L. Hannah, Mody, Rajal K., Silk, Benjamin J., Beal, Jennifer, Chen, Yi, Timme, Ruth, Doyle, Matthew, Fields, Angela, Wise, Matthew, Tillman, Glenn, Defibaugh-Chavez, Stephanie, Kucerova, Zuzana, Sabol, Ashley, Roache, Katie, Trees, Eija, Simmons, Mustafa, Wasilenko, Jamie, Kubota, Kristy, Pouseele, Hannes, Klimke, William, Besser, John, Brown, Eric, Allard, Marc, Gerner-Smidt, Peter

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A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens von Katz, Lee S, Griswold, Taylor, Williams-Newkirk, Amanda J, Wagner, Darlene, Petkau, Aaron, Sieffert, Cameron, Van Domselaar, Gary, Deng, Xiangyu, Carleton, Heather A

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Genome Sequences for Five Strains of the Emerging Pathogen Haemophilus haemolyticus von Jordan, I. King, Conley, Andrew B, Antonov, Ivan V, Arthur, Robert A, Cook, Erin D, Cooper, Guy P, Jones, Bernard L, Knipe, Kristen M, Lee, Kevin J, Liu, Xing, Mitchell, Gabriel J, Pande, Pushkar R, Petit, Robert A, Qin, Shaopu, Rajan, Vani N, Sarda, Shruti, Sebastian, Aswathy, Tang, Shiyuyun, Thapliyal, Racchit, Varghese, Neha J, Ye, Tianjun, Katz, Lee S, Wang, Xin, Rowe, Lori, Frace, Michael, Mayer, Leonard W

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Genomic Basis of a Polyagglutinating Isolate of Neisseria meningitidis von Rishishwar, Lavanya, Katz, Lee S, Sharma, Nitya V, Rowe, Lori, Frace, Michael, Dolan Thomas, Jennifer, Harcourt, Brian H, Mayer, Leonard W, Jordan, I. King

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