The multiMiR R package and database: integration of microRNA-target interactions along with their disease and drug associations von Ru, Yuanbin, Kechris, Katerina J, Tabakoff, Boris, Hoffman, Paula, Radcliffe, Richard A, Bowler, Russell, Mahaffey, Spencer, Rossi, Simona, Calin, George A, Bemis, Lynne, Theodorescu, Dan

Volltext

PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration von Wieder, Cecilia, Cooke, Juliette, Frainay, Clement, Poupin, Nathalie, Bowler, Russell, Jourdan, Fabien, Kechris, Katerina J, Lai, Rachel Pj, Ebbels, Timothy

Volltext

Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values von PEDERSEN, Brent S, SCHWARTZ, David A, YANG, Ivana V, KECHRIS, Katerina J

Volltext

Multi-omics subtyping pipeline for chronic obstructive pulmonary disease von Gillenwater, Lucas A, Helmi, Shahab, Stene, Evan, Pratte, Katherine A, Zhuang, Yonghua, Schuyler, Ronald P, Lange, Leslie, Castaldi, Peter J, Hersh, Craig P, Banaei-Kashani, Farnoush, Bowler, Russell P, Kechris, Katerina J

Volltext

Aptardi predicts polyadenylation sites in sample-specific transcriptomes using high-throughput RNA sequencing and DNA sequence von Lusk, Ryan, Stene, Evan, Banaei-Kashani, Farnoush, Tabakoff, Boris, Kechris, Katerina, Saba, Laura M.

Volltext

Reproducibility of mass spectrometry based metabolomics data von Ghosh, Tusharkanti, Philtron, Daisy, Zhang, Weiming, Kechris, Katerina, Ghosh, Debashis

Volltext

Smccnet 2.0: a comprehensive tool for multi-omics network inference with shiny visualization von Liu, Weixuan, Vu, Thao, R Konigsberg, Iain, A Pratte, Katherine, Zhuang, Yonghua, Kechris, Katerina J

Volltext

A prospective study of associations between in utero exposure to gestational diabetes mellitus and metabolomic profiles during late childhood and adolescence von Perng, Wei, Ringham, Brandy M., Smith, Harry A., Michelotti, Gregory, Kechris, Katerina M., Dabelea, Dana

Volltext

Perfluoroalkyl Substances during Pregnancy and Offspring Weight and Adiposity at Birth: Examining Mediation by Maternal Fasting Glucose in the Healthy Start Study von Starling, Anne P, Adgate, John L, Hamman, Richard F, Kechris, Katerina, Calafat, Antonia M, Ye, Xiaoyun, Dabelea, Dana

Volltext

RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks von Seal, Souvik, Li, Qunhua, Basner, Elle Butler, Saba, Laura M, Kechris, Katerina

Volltext

TreeKernel: interpretable kernel machine tests for interactions between -omics and clinical predictors with applications to metabolomics and COPD phenotypes von Carpenter, Charlie M, Gillenwater, Lucas, Bowler, Russell, Kechris, Katerina, Ghosh, Debashis

Volltext

Prenatal exposure to per- and polyfluoroalkyl substances and infant growth and adiposity: the Healthy Start Study von Starling, Anne P., Adgate, John L., Hamman, Richard F., Kechris, Katerina, Calafat, Antonia M., Dabelea, Dana

Volltext

Mechanism-aware imputation: a two-step approach in handling missing values in metabolomics von Dekermanjian, Jonathan P, Shaddox, Elin, Nandy, Debmalya, Ghosh, Debashis, Kechris, Katerina

Volltext

Multiple biomarkers predict disease severity, progression and mortality in COPD von Zemans, Rachel L, Jacobson, Sean, Keene, Jason, Kechris, Katerina, Miller, Bruce E, Tal-Singer, Ruth, Bowler, Russell P

Volltext

Meta-analysis of peripheral blood gene expression modules for COPD phenotypes von Reinhold, Dominik, Morrow, Jarrett D, Jacobson, Sean, Hu, Junxiao, Ringel, Benjamin, Seibold, Max A, Hersh, Craig P, Kechris, Katerina J, Bowler, Russell P

Volltext

High-Risk Human Papillomavirus E7 Alters Host DNA Methylome and Represses HLA-E Expression in Human Keratinocytes von Cicchini, Louis, Blumhagen, Rachel Z., Westrich, Joseph A., Myers, Mallory E., Warren, Cody J., Siska, Charlotte, Raben, David, Kechris, Katerina J., Pyeon, Dohun

Volltext

Prenatal Exposure to Per- and Polyfluoroalkyl Substances, Umbilical Cord Blood DNA Methylation, and Cardio-Metabolic Indicators in Newborns: The Healthy Start Study von Starling, Anne P, Liu, Cuining, Shen, Guannan, Yang, Ivana V, Kechris, Katerina, Borengasser, Sarah J, Boyle, Kristen E, Zhang, Weiming, Smith, Harry A, Calafat, Antonia M, Hamman, Richard F, Adgate, John L, Dabelea, Dana

Volltext

Proteomic networks and related genetic variants associated with smoking and chronic obstructive pulmonary disease von Konigsberg, Iain R, Vu, Thao, Liu, Weixuan, Litkowski, Elizabeth M, Pratte, Katherine A, Vargas, Luciana B, Gilmore, Niles, Abdel-Hafiz, Mohamed, Manichaikul, Ani, Cho, Michael H, Hersh, Craig P, DeMeo, Dawn L, Banaei-Kashani, Farnoush, Bowler, Russell P, Lange, Leslie A, Kechris, Katerina J

Volltext

Kernel machine tests of association using extrinsic and intrinsic cluster evaluation metrics von Jensen, Alexandria M, DeWitt, Peter, Bettcher, Brianne M, Wrobel, Julia, Kechris, Katerina, Ghosh, Debashis

Volltext

Placental Insulin/IGF-1 Signaling, PGC-1α, and Inflammatory Pathways Are Associated With Metabolic Outcomes at 4-6 Years of Age: The ECHO Healthy Start Cohort von Keleher, Madeline Rose, Erickson, Kathryn, Smith, Harry A, Kechris, Katerina J, Yang, Ivana V, Dabelea, Dana, Friedman, Jacob E, Boyle, Kristen E, Jansson, Thomas

Volltext