Foundry workflow for dynamic-EFA-based yield ramp von Kardach, C., Kapilevich, I., Block, J., Lundquist, T., Kasapi, S., Liao, J., Ng, Y.S., Cory, B.

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The Immune Landscape of Cancer von Bortone, Dante S., Eddy, James A., Liu, Yuexin, Weinstein, John N., Holt, Robert A., Zenklusen, Jean C., Cho, Juok, Reynolds, Sheila, Liu, Wenbin, Ryan, Michael, Chakravarty, Debyani, Schultz, Nikolaus, Stuart, Joshua M., Wilkerson, Matthew D., Balasundaram, Miruna, Carlsen, Rebecca, Chuah, Eric, Holt, Robert, Lee, Darlene, Ha, Gavin, Schumacher, Steven E., Cope, Leslie, Balu, Saianand, Shi, Yan, Hinoue, Toshinori, Glenn, Robert, Miller, Christopher A., Curley, Erin, Mallery, David, Morris, Scott, Longatto-Filho, Adhemar, Reis, Rui M., Scapulatempo-Neto, Cristovam, Singh, Rosy, Le, Xuan, Thorp, Richard, Setdikova, Galiya, Shabunin, Alexey, Barrett, Wendi, Ostrom, Quinn T., Karlan, Beth Y., Hu, Hai, Latour, Mathieu, Lacombe, Louis, Su, Tao, Signoretti, Sabina, Marks, Jeffrey, Olson, Jeffrey J., Sica, Gabriel, Stoop, Hans, Pollo, Bianca, Aymerich, Marta, Stepa, Serghei, Moser, Catherine, Roberts, Lewis, Czerniak, Bogdan, Lazar, Alexander J., Jakrot, Valerie, Scolyer, Richard, Thompson, John, Wilmott, James, Reuter, Victor, Tien, Nguyen Viet, Park, Joong-Won, Pinto, Peter A., Moncrieff, Marc, Botnariuc, Natalia, Pirtac, Maria, Parfitt, Jeremy, Bifulco, Carlo, Antenucci, Anna, Grazi, Gianluca, Marino, Mirella, Chevalier, Simone, McKercher, Ginette, Naska, Theresa, Borgia, Jeffrey A., Pool, Mark, Junker, Kerstin, Moiseenko, Fedor, Hilty, Joe, Pilarski, Robert, Porten, Sima, Asa, Sylvia L., Schadendorf, Dirk, Disaia, Philip, Kelley, Robin K., Sifri, Suzanne, Mannelli, Massimo, Knutson, Tina, Sigmund, Rita, Postier, Russel, Walker, Joan, Feldman, Michael, Luketich, James, Rozek, Laura, Fong, Kwun M., Hooke, Jeffrey A., Govindan, Ramaswamy, Aredes, Natália D.

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An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics von Omberg, Larsson, Wolf, Denise M., Sofia, Heidi J., Chudamani, Sudha, Lolla, Laxmi, Pihl, Todd, Lin, Pei, Chambwe, Nyasha, Kramer, Roger, Thorsson, Vesteinn, Wang, Jing, Armenia, Joshua, Chatila, Walid K., de Bruijn, Ino, Gross, Benjamin E., Brooks, Denise, Tam, Angela, Tse, Kane, Meng, Shaowu, Korchina, Viktoriya, Cordes, Matthew G., McLellan, Michael D., Miller, Christopher A., Shelton, Candace, Yena, Peggy, Wise, Lisa, Costello, Tony, Hovens, Christopher, Silveira, Henrique C.S., Singh, Rosy, Anderson, Matthew L., Duffy, Elizabeth R., Tavobilov, Mikhail, Cramer, Daniel, Horowitz, Neil, Fulop, Jordonna, Wolinsky, Yingli, Sloan, Andrew E., Mural, Richard J., Latour, Mathieu, Lacombe, Louis, Wang, Timothy, Magliocca, Kelly, Pickens, Alan, Shin, Dong M., Van Meir, Erwin G., Zhang, Hongzheng, Cuzzubbo, Stefania, Hartmann, Arndt, Stoehr, Christine, Wach, Sven, Kycler, Witold, Chung, Ki, Martin, Julie, De Rienzo, Assunta, Richards, William G., Kalkanis, Steven, Gabra, Hani, Ahn, Keunsoo, Farnell, Michael, Patel, Tushar, Smallridge, Robert, Rice, David, Troncoso, Patricia, Mann, Graham, Levine, Douglas A., Singer, Samuel, Linehan, W. Marston, Melamed, Jonathan, Parfitt, Jeremy, Sekhon, Harman, Thomas, George, Bifulco, Carlo, Hayward, Nicholas, Grazi, Gianluca, de Krijger, Ronald, Birsoy, Kivanc, Brewer, Cathy, Williams, Felicia, Pool, Mark, Dinkin, Mikhail, Schoenfield, Lynn, Hansen, Paul, Asa, Sylvia L., Glenn, Pat, Jungk, Christin, Ma, Deqin, Milhem, Mohammed, Madan, Rashna, Mannel, Robert, Dos Santos, Jose Sebastião, Moyer, Jeffey, Rozek, Laura, Yang, Ian, Korst, Robert, Rathmell, W. Kimryn, Drake, Bettina, Westervelt, Peter, Lee, Jung Il, Hu, Hai

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Oncogenic Signaling Pathways in The Cancer Genome Atlas von Chatila, Walid K., Luna, Augustin, Kantheti, Havish S., Daian, Foysal, Shmulevich, Ilya, Greene, Casey S., Iavarone, Antonio, Tward, Aaron D., Meyerson, Matthew, Sofia, Heidi J., Zenklusen, Jean C., Pihl, Todd, Meier, Sam, Noble, Michael S., Kramer, Roger, Hegde, Apurva M., Li, Jun, Rao, Arvind, Abeshouse, Adam, Schultz, Nikolaus, Taylor, Barry S., Stuart, Joshua M., Wong, Christopher K., Parker, Joel S., Carlsen, Rebecca, Tam, Angela, Gabriel, Stacey B., Ha, Gavin, Schumacher, Steven E., Maglinte, Dennis T., Balu, Saianand, Skelly, Tara, Laird, Peter W., Lewis, Lora, Muzny, Donna, Santibanez, Jireh, Wang, Min, Morris, Scott, Shelton, Candace, Gerken, Mark, Costello, Tony, Reis, Rui M., Scapulatempo-Neto, Cristovam, Singh, Rosy, Duffy, Elizabeth R., Setdikova, Galiya, Devine, Karen, Ostrom, Quinn T., Deyarmin, Brenda, Kvecher, Leonid, Mural, Richard J., Latour, Mathieu, Lacombe, Louis, Lipp, Eric, Marks, Jeffrey, Pickens, Alan, Shin, Dong M., Zhang, Hongzheng, Calatozzolo, Chiara, Cuzzubbo, Stefania, Kycler, Witold, Giné, Eva, Beuschlein, Felix, Borad, Mitesh, Chandan, Vishal, Farnell, Michael, Torbenson, Michael, Logothetis, Christopher, Rice, David, Jakrot, Valerie, Mann, Graham, Moncrieff, Marc, Doruc, Serghei, Bartlett, John, Parfitt, Jeremy, Bifulco, Carlo, Hayward, Nicholas, Grazi, Gianluca, Marino, Mirella, Naska, Theresa, Borgia, Jeffrey A., Pool, Mark, Gaudio, Eugenio, Bell, Sue, Hilty, Joe, Sexton, Katherine C., Asa, Sylvia L., Schlomm, Thorsten, Prados, Michael, Smith-McCune, Karen, Bossler, Aaron, Moxley, Katherine, Carlotti, Carlos Gilberto, Swisher, Elizabeth, Korst, Robert, Rathmell, W. Kimryn, Heath, Sharon, Aredes, Natália D., Mariamidze, Armaz, Van Allen, Eliezer M.

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Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer von Wolf, Denise M., Cherniack, Andrew D., Sanchez-Vega, Francisco, Sun, Qiang, Wu, Ye, Gehlenborg, Nils, Zhang, Hailei, Akbani, Rehan, Ling, Shiyun, Rao, Arvind, Phillips, Sarah M., Sun, Yichao, Benz, Christopher, Dhalla, Noreen, Robertson, A. Gordon, Sipahimalani, Payal, Wong, Tina, Weisenberger, Daniel J., Bodenheimer, Tom, Roach, Jeffrey, Simons, Janae V., Fan, Huihui, Zhou, Wanding, Dinh, Huyen, Doddapaneni, HarshaVardhan, Han, Yi, Lee, Sandra, Liu, Xiuping, Hess, Julian, Ding, Li, Fulton, Lucinda A., Shelton, Troy, Zmuda, Erik, de Carvalho, Ana C., Vidal, Daniel O., Eschbacher, Jennifer, Hermes, Beth, Noss, Ardene, Shabunin, Alexey, Eckman, John, Bennett, Joseph, Rabeno, Brenda, Swanson, Patricia, Bergeron, Alain, Staugaitis, Susan M., Chabot, John, McCall, Shannon, Behera, Madhusmita, Brat, Daniel J., Force, Seth, Eijckenboom, Wil, Zwarthoff, Ellen C., Cuppini, Lucia, Murawa, Dawid, Mikkelsen, Tom, Hanh, Phan Thi, Phu, Bui Duc, Tang, Yufang, Colman, Howard, Birrer, Michael, Ho, Thai, Nagorney, David, Meric-Bernstam, Funda, Moran, Cesar, Hersey, Peter, Synott, Maria, Mirsaidi, Cyrus, Metwalli, Adam R., Vocke, Cathy D., Goparaju, Chandra, Cernat, Mircea, Gilbert, Sebastien, Timmers, Henri, Schilero, Cathy, Manikhas, George, Chesla, David, Janssen, Klaus-Peter, Slotta-Huspenina, Julia, Davis, Amy, Elder, J. Bradley, Lehman, Norman L., Mandt, Randy, Wakely, Paul, Powers, James, Carroll, Peter R., Chan, June M., Roggin, Kevin, Fehrenbach, Ashley, Galbraith, Joseph, Knudson, Michael, Saad, Fred, Bocklage, Therese, Zuna, Rosemary, Feldman, Michael, Quintero-Aguilo, Mario, Tirapelli, Daniela, Creaney, Jenette, Shelley, Carl Simon, Bradford, Carol, Prince, Mark

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Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation von Malta, Tathiane M., Gentles, Andrew J., Weinstein, John N., Czerwińska, Patrycja, Heyn, Holger, Godwin, Andrew K., Zhang, Jiashan (Julia), Wu, Ye, Liu, Yuexin, Reynolds, Sheila, Akbani, Rehan, Kanchi, Rupa S., Ladanyi, Marc, Peto, Myron, Bowlby, Reanne, Schein, Jacqueline E., Sipahimalani, Payal, Thiessen, Nina, Cope, Leslie, Weisenberger, Daniel J., Hoyle, Alan P., Mieczkowski, Piotr A., Shi, Yan, Veluvolu, Umadevi, Zhou, Wanding, Bellair, Michelle, Creighton, Chad J., Gibbs, Richard A., Li, Wei, Xi, Liu, Zhao, Fengmei, Mardis, Elaine R., Paulauskis, Joseph, Eschbacher, Jennifer, Ittmann, Michael, Le, Xuan, Thorp, Richard, Lyadov, Vladimir, Setdikova, Galiya, Raut, Chandrajit P., Barrett, Wendi, Karlan, Beth Y., Hu, Hai, Bennett, Joseph, Chabot, John, Hibshoosh, Hanina, Potapova, Olga, Voronina, Olga, Berchuck, Andrew, McCall, Shannon, Olson, Jeffrey J., Ramalingam, Suresh, Stoop, Hans, Guillermo, Armando López, Castle, Erik, Kopp, Karla, Roberts, Lewis, Stanton, Melissa, Yang, Ju Dong, Broaddus, Russell, Guo, Charles, Moran, Cesar, Tamboli, Pheroze, Thompson, Timothy, Tsao, Anne, Wistuba, Ignacio, Haydu, Lauren, Saw, Robyn, Scolyer, Richard, Thompson, John, Reuter, Victor, Drwiega, Paul, Hung, Nguyen Phi, Pass, Harvey, Gorincioi, Ghenadie, Gilbert, Sebastien, Tamakawa, Raina, Chevalier, Simone, Morrison, Carl, Borgia, Jeffrey A., Junker, Kerstin, Bragazzi, Maria Consiglia, Moiseenko, Fedor, Duell, Rebecca, Pilarski, Robert, Senecal, Kelly, Henderson, Joel, Schadendorf, Dirk, Olabode, Oluwole, Nelson, Mark, Roggin, Kevin, Carey, Francis, Carney, Michael, Hernandez, Brenda, Walker, Joan, Valdivieso, Federico, Luketich, James, Tirapelli, Daniela, Catto, James, Kovatich, Albert J.

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Comprehensive Characterization of Cancer Driver Genes and Mutations von Colaprico, Antonio, Cao, Song, Liang, Wen-Wei, Hess, Julian M., Ferguson, Martin L., Hutter, Carolyn M., Tarnuzzer, Roy, Wang, Zhining, Noble, Michael S., Dhankani, Varsha, Knijnenburg, Theo, Miller, Michael, Abeshouse, Adam, Ladanyi, Marc, Luna, Augustin, Wong, Christopher K., Yau, Christina, Kasaian, Katayoon, Kucherlapati, Melanie H., Danilova, Ludmila, Bootwalla, Moiz S., Fan, Cheng, Mose, Lisle E., Roach, Jeffrey, Tan, Donghui, Covington, Kyle, Donehower, Lawrence A., Drummond, Jennifer, Liu, Xiuping, Morgan, Margaret, Wheeler, David A., Appelbaum, Elizabeth L., Bailey, Matthew, Kandoth, Cyriac, Wilson, Richard K., Penny, Robert, Thompson, Eric, Zmuda, Erik, de Carvalho, Ana C., Fregnani, José H., Huntsman, David, Kohl, Bernard, Paklina, Oxana, McPherson, Christopher, Barnholtz-Sloan, Jill S., Tucker, Kelinda, Larson, Caroline, Iacocca, Mary, Bergeron, Alain, Sepulveda, Antonia, Desjardins, Laurence, Sastre, Xavier, Cheng, Feixiong, Force, Seth, Khuri, Fadlo, Owonikoko, Taofeek, Korpershoek, Esther, Looijenga, Leendert, DiMeco, Francesco, Kycler, Witold, Chung, Ki, Noushmehr, Houtan, Scarpace, Lisa, Campo, Elias, Van Bang, Nguyen, Colman, Howard, Breggia, Anne, Bryce, Alan H., Copland, John A., Petersen, Gloria, Zhang, Lizhi, Mann, Graham, Mirsaidi, Cyrus, Zaren, Howard, Stancul, Irina, Tcaciuc, Diana, Arnaout, Angel, Rassl, Doris M., Urba, Walter, Farver, Carol, Raymond, Daniel, Dinkin, Mikhail, Carpino, Guido, Dubina, Michael, Abdel-Rahman, Mohamed H., Mandt, Randy, Nguyen, Phuong, Rai, Karan, Waldmann, Jens, Fassnacht, Martin, Simon, Ronald, Fehrenbach, Ashley, von Deimling, Andreas, Jacobus, Laura, Carlotti, Carlos Gilberto, Godwin, Eryn M., Carey, Thomas, Getz, Gad, Lazar, Alexander J., Ding, Li

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Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients von Caesar-Johnson, Samantha J., Hutter, Carolyn M., Sun, Qiang, Wu, Ye, Gehlenborg, Nils, Zhang, Hailei, Broom, Bradley M., Ling, Shiyun, Rao, Arvind, Kundra, Ritika, Dhalla, Noreen, Robertson, A. Gordon, Wong, Tina, Kucherlapati, Raju S., Fan, Cheng, Perou, Charles M., Roach, Jeffrey, Simons, Janae V., Fan, Huihui, Shen, Hui, Dinh, Huyen, Doddapaneni, HarshaVardhan, Lee, Sandra, Hess, Julian, Appelbaum, Elizabeth L., Ding, Li, Fulton, Lucinda A., Shelton, Troy, Sherman, Mark, Zmuda, Erik, Corcoran, Niall, de Carvalho, Ana C., Vidal, Daniel O., Hermes, Beth, Paklina, Oxana, Shabunin, Alexey, Eckman, John, Rabeno, Brenda, Bergeron, Alain, Staugaitis, Susan M., Desjardins, Laurence, Sastre, Xavier, Bigner, Darell, McCall, Shannon, McLendon, Roger, Behera, Madhusmita, Brat, Daniel J., Force, Seth, Eijckenboom, Wil, van Kessel, Kim E., Zwarthoff, Ellen C., Wullich, Bernd, Murawa, Dawid, Phu, Bui Duc, Tang, Yufang, Colman, Howard, Bell, Debra, Flotte, Thomas, Ho, Thai, O'Brien, Daniel, O'Neill, Brian Patrick, Rivera, Michael, Zhang, Lizhi, Bondaruk, Jolanta, Gershenwald, Jeffrey, Hersey, Peter, Quinn, Michael, Scolyer, Richard, Stretch, Jonathan, Synott, Maria, Wilmott, James, Mirsaidi, Cyrus, Nair, Praveen, Vocke, Cathy D., Goparaju, Chandra, Cernat, Mircea, Timmers, Henri, Schilero, Cathy, Manikhas, George, Alvaro, Domenico, Dhanasekaran, Renumathy, Duell, Rebecca, Mandt, Randy, Nguyen, Phuong, Wakely, Paul, Huland, Hartwig, Carroll, Peter R., Chan, June M., Fehrenbach, Ashley, Galbraith, Joseph, Knudson, Michael, Saad, Fred, Zuna, Rosemary, Feldman, Michael, Creaney, Jenette, Kendall, Sara, Bradford, Carol, Haddad, Andrea, DiPersio, John, Rubin, Mark A.

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Genomic and Functional Approaches to Understanding Cancer Aneuploidy von Demchok, John A., Ferguson, Martin L., Tarnuzzer, Roy, Yang, Liming, DeFreitas, Timothy, Noble, Michael S., Voet, Doug, Dhankani, Varsha, Leinonen, Kalle, Ju, Zhenlin, Korkut, Anil, Liu, Wenbin, Weinstein, John N., Abeshouse, Adam, Chakravarty, Debyani, Taylor, Barry S., Anur, Pavana, Wong, Christopher K., Yau, Christina, Ally, Adrian, Kasaian, Katayoon, Mayo, Michael, Moore, Richard A., Berger, Ashton C., Gao, Galen F., Meyerson, Matthew, Danilova, Ludmila, Bootwalla, Moiz S., Hoadley, Katherine A., Jones, Corbin D., Mose, Lisle E., Tan, Donghui, Hu, Jianhong, Liu, Xiuping, Sheth, Margi, Bailey, Matthew, Fronick, Catrina C., Kandoth, Cyriac, Wilson, Richard K., Lau, Kevin, Penny, Robert, Thompson, Eric, Fregnani, José H., McPherson, Christopher, Berkowitz, Ross, Barnholtz-Sloan, Jill S., Myers, Jerome, Tucker, Kelinda, Zelinka, Tomas, Sepulveda, Antonia, Desjardins, Laurence, Lipp, Eric, Sharp, Alexis, Delman, Keith, Owonikoko, Taofeek, Oosterhuis, Wolter, DiMeco, Francesco, Finocchiaro, Gaetano, Perin, Alessandro, Wiznerowicz, Maciej, Baudin, Eric, Noushmehr, Houtan, Scarpace, Lisa, Dottino, Peter R., Breggia, Anne, Bryce, Alan H., Copland, John A., Kocher, Jean-Pierre, Petersen, Gloria, Rivera, Michael, Esmaeli, Bita, Logothetis, Christopher, Sood, Anil, Kefford, Richard, Shannon, Kerwin, Ghossein, Ronald, Smith, Jennifer, Wentzensen, Nicolas, Tcaciuc, Diana, Engel, Jay, Rassl, Doris M., Urba, Walter, Merola, Roberta, Cardinale, Vincenzo, Carpino, Guido, Cottingham, Sandra, Janssen, Klaus-Peter, Davis, Amy, Lang, James, Rai, Karan, Kastl, Alison, Waldmann, Jens, Simon, Ronald, Simko, Jeffry, VandenBerg, Scott, Unterberg, Andreas, Beer, David, Mora Pinero, Edna M., Peterson, Lisa, Ley, Timothy

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Pathogenic Germline Variants in 10,389 Adult Cancers von Ritter, Deborah I., Reynolds, Sheila, Houlahan, Kathleen E., Cho, Juok, Reynolds, Sheila, Akbani, Rehan, Phillips, Sarah M., Zhang, Hongxin, Balasundaram, Miruna, Chuah, Eric, Holt, Robert, Schein, Jacqueline E., Sipahimalani, Payal, Thiessen, Nina, Beroukhim, Rameen, Cope, Leslie, Weisenberger, Daniel J., Hoyle, Alan P., Jefferys, Stuart R., Mieczkowski, Piotr A., Perou, Amy H., Shi, Yan, Veluvolu, Umadevi, Fan, Huihui, Donehower, Lawrence A., Ding, Li, Mardis, Elaine R., Curley, Erin, Mallery, David, Paulauskis, Joseph, Lichtenberg, Tara M., Eschbacher, Jennifer, Ittmann, Michael, Andry, Chris, Tavobilov, Mikhail, Cramer, Daniel, Barrett, Wendi, Karlan, Beth Y., Zach, Leigh Anne, Hu, Hai, Swanson, Patricia, Chabot, John, Su, Tao, Voronina, Olga, Signoretti, Sabina, Berchuck, Andrew, Houck, John, Hartmann, Arndt, Hanh, Phan Thi, Juhl, Hartmut, Kopp, Karla, Roberts, Lewis, Yang, Ju Dong, Moran, Cesar, Ramondetta, Lois, Troncoso, Patricia, Tsao, Anne, Wistuba, Ignacio, Scolyer, Richard, Stretch, Jonathan, Wilmott, James, Reuter, Victor, Park, Joong-Won, Hung, Nguyen Phi, Kebebew, Electron, Pinto, Peter A., Moncrieff, Marc, Pass, Harvey, Botnariuc, Natalia, Pirtac, Maria, Tamakawa, Raina, Antenucci, Anna, Facciolo, Francesco, Chevalier, Simone, Brewer, Cathy, Pennell, Nathan A., Omberg, Larsson, Pilarski, Robert, Senecal, Kelly, Schadendorf, Dirk, Sauter, Guido, Olabode, Oluwole, Disaia, Philip, Roggin, Kevin, Mannelli, Massimo, Postier, Russel, Walker, Joan, Feldman, Michael, Dhir, Rajiv, Luketich, James, Prince, Mark, Rozek, Laura, Fong, Kwun M., Shriver, Craig D., Govindan, Ramaswamy, Heath, Sharon, Aredes, Natália D., Wendl, Michael C., Reimand, Jüri, Meric-Bernstam, Funda

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A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers von Berger, Ashton C., Gunaratne, Preethi H., Wang, Chen, Kuderer, Nicole M., Ojesina, Akinyemi I., Chen, Ting-Wen, Liu, Liang, Vellano, Christopher P., Caesar-Johnson, Samantha J., Demchok, John A., Kasapi, Melpomeni, Ferguson, Martin L., Yang, Liming, Gehlenborg, Nils, Noble, Michael S., Dhankani, Varsha, Knijnenburg, Theo, Liu, Yuexin, Kanchi, Rupa S., Ling, Shiyun, de Bruijn, Ino, Heins, Zachary J., Ladanyi, Marc, Sun, Yichao, Dhalla, Noreen, Mungall, Andrew J., Sipahimalani, Payal, Beroukhim, Rameen, Kucherlapati, Raju S., Danilova, Ludmila, Bootwalla, Moiz S., Maglinte, Dennis T., Fan, Cheng, Covington, Kyle, Donehower, Lawrence A., Drummond, Jennifer, Liu, Xiuping, Hess, Julian, Appelbaum, Elizabeth L., Bailey, Matthew, Fulton, Lucinda A., Kandoth, Cyriac, Mardis, Elaine R., Penny, Robert, Lichtenberg, Tara M., Zmuda, Erik, de Carvalho, Ana C., Fregnani, José H., Barnholtz-Sloan, Jill S., Eckman, John, Rabeno, Brenda, Bergeron, Alain, Desjardins, Laurence, Sastre, Xavier, Bigner, Darell, McLendon, Roger, Secord, Angeles, Brat, Daniel J., Force, Seth, Khuri, Fadlo, Zwarthoff, Ellen C., Finocchiaro, Gaetano, Perin, Alessandro, Wiznerowicz, Maciej, Baudin, Eric, Noushmehr, Houtan, Birrer, Michael, Copland, John A., Ho, Thai, Zhang, Lizhi, Meric-Bernstam, Funda, Sood, Anil, Carter, Candace, Shannon, Kerwin, Mirsaidi, Cyrus, Zaren, Howard, Hung, Nguyen Phi, Metwalli, Adam R., Tcaciuc, Diana, Rassl, Doris M., Farver, Carol, Schilero, Cathy, Manikhas, George, Janssen, Klaus-Peter, Abdel-Rahman, Mohamed H., Lehman, Norman L., Mandt, Randy, Nguyen, Phuong, Rai, Karan, Powers, James, Fehrenbach, Ashley, von Deimling, Andreas, Galbraith, Joseph, Adebamowo, Sally N., Boussioutas, Alex, Zuna, Rosemary, Rubin, Mark A., Weinstein, John N., Levine, Douglas A., Akbani, Rehan

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Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas von Kim, Jaegil, Mishra, Lopa, Wang, Zhining, Liu, Jia, Getz, Gad, Lawrence, Michael S., Saksena, Gordon, Voet, Doug, Zhang, Wei, Hegde, Apurva M., Korkut, Anil, Sanchez-Vega, Francisco, Sander, Chris, Schultz, Nikolaus, Stuart, Joshua M., Parker, Joel S., Ally, Adrian, Carlsen, Rebecca, Kasaian, Katayoon, Ma, Yussanne, Marra, Marco A., Berger, Ashton C., Cherniack, Andrew D., Shih, Juliann, Kucherlapati, Melanie H., Maglinte, Dennis T., Hale, Walker, Korchina, Viktoriya, Morgan, Margaret, Santibanez, Jireh, Wang, Linghua, Wheeler, David A., Fulton, Robert S., Thompson, Eric, Bowen, Jay, Gerken, Mark, Leraas, Kristen M., Reis, Rui M., Kohl, Bernard, Berkowitz, Ross, Malykh, Andrei, Fulop, Jordonna, Sloan, Andrew E., Larson, Caroline, Iacocca, Mary, Roman-Roman, Sergio, Stern, Marc-Henri, Cheng, Feixiong, Delman, Keith, Maithel, Shishir, Chen, Chu, Stoehr, Robert, Edenfield, W. Jeffrey, Bubley, Glenn, De Rienzo, Assunta, Richards, William G., Kalkanis, Steven, Scarpace, Lisa, Martignetti, John A., Borad, Mitesh, O’Neill, Brian Patrick, Que, Florencia, Smyrk, Thomas, Esmaeli, Bita, Sood, Anil, Kakavand, Hojabr, Mann, Graham, Gopalan, Anuradha, Singh, Bhuvanesh, Miller, Judy, Yang, Hannah, Melamed, Jonathan, Caraman, Irina, Clipca, Adrian, Mura, Sergiu, Albert, Monique, Bartlett, John, Urba, Walter, Raymond, Daniel, Kumar, Bahavna, Sexton, Katherine C., Fassnacht, Martin, Graefen, Markus, Tennstedt, Pierre, Kendler, Ady, Campos, Benito, Jacobus, Laura, Adebamowo, Sally N., Giordano, Thomas, Mes-Masson, Anne-Marie, Moore, Kathleen, Moxley, Katherine, Pinero, Edna M. Mora, Dos Santos, Jose Sebastião, Agnew, Kathy, Godwin, Eryn M., Shipman, Cassaundra, Carey, Thomas, Wolf, Gregory, Van Tine, Brian

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lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer von Li, Song, Wan, Yunhu, Wu, Ye, Akbani, Rehan, Rao, Arvind, Luna, Augustin, Phillips, Sarah M., Sumer, S. Onur, Spellman, Paul, Benz, Christopher, Dhalla, Noreen, Holt, Robert, Sadeghi, Sara, Sipahimalani, Payal, Thiessen, Nina, Van Den Berg, David J., Perou, Charles M., Simons, Janae V., Doddapaneni, HarshaVardhan, Li, Wei, Bailey, Matthew, Ding, Li, Mallery, David, Shelton, Troy, Gastier-Foster, Julie M., Zmuda, Erik, Corcoran, Niall, Eschbacher, Jennifer, Noss, Ardene, Andry, Chris, Raut, Chandrajit P., Barrett, Wendi, De Rose, Agostino, Giuliante, Felice, Hagedorn, Curt H., Bennett, Joseph, Rabeno, Brenda, Swanson, Patricia, Staugaitis, Susan M., Chabot, John, Potapova, Olga, Secord, Angeles, Hanh, Phan Thi, Juhl, Hartmut, Akeredolu, Teniola, Birrer, Michael, Flotte, Thomas, Ho, Thai, Roberts, Lewis, Stanton, Melissa, Yang, Ju Dong, Gonzalez, Ana Maria Angulo, Bondaruk, Jolanta, Fujimoto, Junya, Gershenwald, Jeffrey, Lazar, Alexander J., Meric-Bernstam, Funda, Moran, Cesar, Synott, Maria, Wilmott, James, Reuter, Victor, Nair, Praveen, Metwalli, Adam R., Schmidt, Laura S., Vocke, Cathy D., Cernat, Mircea, Chemencedji, Inga, Pirtac, Maria, Alexopoulou, Iakovina, Tamakawa, Raina, Timmers, Henri, Schilero, Cathy, Smolenski, Kathy, Manikhas, George, Alvaro, Domenico, Chesla, David, Moiseenko, Fedor, Aziz, Dina, Elder, J. Bradley, Mandt, Randy, Wakely, Paul, Powers, James, Chan, June M., Landen, Charles N., Roggin, Kevin, Hernandez, Brenda, Unterberg, Andreas, Knudson, Michael, Knutson, Tina, Godwin, Andrew K., Bocklage, Therese, Postier, Russel, Zuna, Rosemary, Feldman, Michael, Dhir, Rajiv, Tirapelli, Daniela, Catto, James, Shelley, Carl Simon, Fong, Kwun M., Shriver, Craig D.

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Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas von Knijnenburg, Theo A., Liu, Yuexin, Kim, Pora, Zhang, Shaojun, Zhao, Zhongming, Laird, Peter W., Ferguson, Martin L., Liu, Jia, Lawrence, Michael S., Saksena, Gordon, Voet, Doug, Dhankani, Varsha, Hegde, Apurva M., Ladanyi, Marc, Sander, Chris, Anur, Pavana, Wong, Christopher K., Yau, Christina, Ally, Adrian, Kasaian, Katayoon, Ma, Yussanne, Shih, Juliann, Maglinte, Dennis T., Drummond, Jennifer, Hale, Walker, Korchina, Viktoriya, Morgan, Margaret, Morton, Donna, Sheth, Margi, Wang, Linghua, Wheeler, David A., Kandoth, Cyriac, Lau, Kevin, Thompson, Eric, Leraas, Kristen M., Huntsman, David, Horowitz, Neil, Fulop, Jordonna, Sloan, Andrew E., Tucker, Kelinda, Zelinka, Tomas, Iacocca, Mary, Sepulveda, Antonia, Roman-Roman, Sergio, Stern, Marc-Henri, Lipp, Eric, Delman, Keith, Gillis, Ad, Korpershoek, Esther, Looijenga, Leendert, Perin, Alessandro, Stoehr, Christine, Stoehr, Robert, Wach, Sven, Kycler, Witold, Chung, Ki, Martin, Julie, Bubley, Glenn, De Rienzo, Assunta, Richards, William G., Campo, Elias, Evason, Kimberley, Borad, Mitesh, Kocher, Jean-Pierre, Petersen, Gloria, Que, Florencia, Ajani, Jaffer A., Esmaeli, Bita, Logothetis, Christopher, Sood, Anil, Mann, Graham, Gopalan, Anuradha, Zaren, Howard, Yang, Hannah, Caraman, Irina, Mura, Sergiu, Stancul, Irina, Albert, Monique, Arnaout, Angel, Rassl, Doris M., Barnett, Gene, Farver, Carol, Raymond, Daniel, Dinkin, Mikhail, Kumar, Bahavna, Waldmann, Jens, Fassnacht, Martin, Tennstedt, Pierre, Glenn, Pat, Kendler, Ady, Steele, Ruth, Campos, Benito, Adebamowo, Sally N., Giordano, Thomas, Mes-Masson, Anne-Marie, Moxley, Katherine, Pinero, Edna M. Mora, Carey, Thomas, Wolf, Gregory, Ley, Timothy

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Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images von Kurc, Tahsin, Demchok, John A., Ferguson, Martin L., Tarnuzzer, Roy, Yang, Liming, DeFreitas, Timothy, Noble, Michael S., Voet, Doug, Dhankani, Varsha, Leinonen, Kalle, Ju, Zhenlin, Korkut, Anil, Liu, Wenbin, Abeshouse, Adam, Chakravarty, Debyani, Taylor, Barry S., Anur, Pavana, Wong, Christopher K., Yau, Christina, Ally, Adrian, Kasaian, Katayoon, Mayo, Michael, Moore, Richard A., Berger, Ashton C., Gao, Galen F., Meyerson, Matthew, Danilova, Ludmila, Bootwalla, Moiz S., Hoadley, Katherine A., Jones, Corbin D., Mose, Lisle E., Tan, Donghui, Hu, Jianhong, Liu, Xiuping, Sheth, Margi, Bailey, Matthew, Fronick, Catrina C., Kandoth, Cyriac, Wilson, Richard K., Lau, Kevin, Penny, Robert, Thompson, Eric, Fregnani, José H., McPherson, Christopher, Berkowitz, Ross, Barnholtz-Sloan, Jill S., Myers, Jerome, Tucker, Kelinda, Zelinka, Tomas, Sepulveda, Antonia, Desjardins, Laurence, Lipp, Eric, Sharp, Alexis, Delman, Keith, Owonikoko, Taofeek, Oosterhuis, Wolter, DiMeco, Francesco, Finocchiaro, Gaetano, Perin, Alessandro, Wiznerowicz, Maciej, Baudin, Eric, Noushmehr, Houtan, Scarpace, Lisa, Dottino, Peter R., Breggia, Anne, Bryce, Alan H., Copland, John A., Kocher, Jean-Pierre, Petersen, Gloria, Rivera, Michael, Esmaeli, Bita, Logothetis, Christopher, Sood, Anil, Kefford, Richard, Shannon, Kerwin, Ghossein, Ronald, Smith, Jennifer, Wentzensen, Nicolas, Tcaciuc, Diana, Engel, Jay, Rassl, Doris M., Urba, Walter, Merola, Roberta, Cardinale, Vincenzo, Carpino, Guido, Cottingham, Sandra, Janssen, Klaus-Peter, Davis, Amy, Lang, James, Rai, Karan, Kastl, Alison, Waldmann, Jens, Simon, Ronald, Simko, Jeffry, VandenBerg, Scott, Unterberg, Andreas, Beer, David, Peterson, Lisa, Ley, Timothy, Thorsson, Vésteinn

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The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma von Reznik, Ed, Reuter, Victor E., Signoretti, Sabina, Srinivasan, Ramaprasad, Wheeler, David A., Yang, Lixing, Kim, William Y., Robertson, A. Gordon, Zhang, Jiashan (Julia), Wu, Ye, Liu, Yuexin, Kanchi, Rupa S., Zhang, Jiexin, Gross, Benjamin E., Kundra, Ritika, Phillips, Sarah M., Zhang, Hongxin, Peto, Myron, Mungall, Andrew J., Lai, Phillip H., Van Den Berg, David J., Bodenheimer, Tom, Simons, Janae V., Veluvolu, Umadevi, Fan, Huihui, Bellair, Michelle, Dinh, Huyen, Doddapaneni, HarshaVardhan, Han, Yi, Lee, Sandra, Li, Wei, Mardis, Elaine R., Gastier-Foster, Julie M., Lichtenberg, Tara M., Le, Xuan, Thorp, Richard, Lyadov, Vladimir, De Rose, Agostino, Rabeno, Brenda, Têtu, Bernard, Chabot, John, Hibshoosh, Hanina, Potapova, Olga, Mariani, Odette, Bigner, Darell, Stoop, Hans, Cuppini, Lucia, Finocchiaro, Gaetano, Murawa, Dawid, Guillermo, Armando López, Van Bang, Nguyen, Akeredolu, Teniola, Birrer, Michael, Nagorney, David, Stanton, Melissa, Yang, Ju Dong, Bondaruk, Jolanta, Broaddus, Russell, Guo, Charles, Lazar, Alexander J., Meric-Bernstam, Funda, Tsao, Anne, Carter, Candace, Haydu, Lauren, Hersey, Peter, Synott, Maria, Drwiega, Paul, Hung, Nguyen Phi, Kebebew, Electron, Metwalli, Adam R., Schmidt, Laura S., Cernat, Mircea, Gorincioi, Ghenadie, Tamakawa, Raina, Chevalier, Simone, McKercher, Ginette, Smolenski, Kathy, Alvaro, Domenico, Bragazzi, Maria Consiglia, Cardinale, Vincenzo, Chesla, David, Cottingham, Sandra, Lehman, Norman L., Powers, James, Huland, Hartwig, Sauter, Guido, Carroll, Peter R., Forgie, Ian, Carney, Michael, Knutson, Tina, Godwin, Andrew K., Boussioutas, Alex, Saad, Fred, Bocklage, Therese, Feldman, Michael, Valdivieso, Federico, Dhir, Rajiv, Sankarankuty, Ajith, Fantacone-Campbell, J. Leigh, Rubin, Mark A.

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Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics von Wyczalkowski, Matthew A., Ferguson, Martin L., Hutter, Carolyn M., Tarnuzzer, Roy, Naresh, Rashi, DeFreitas, Timothy, Noble, Michael S., Dhankani, Varsha, Leinonen, Kalle, Miller, Michael, Broom, Bradley M., Ju, Zhenlin, Korkut, Anil, Mills, Gordon B., Weinstein, John N., Armenia, Joshua, Ladanyi, Marc, Luna, Augustin, Ochoa, Angelica, Wong, Christopher K., Yau, Christina, Mayo, Michael, Meyerson, Matthew, Danilova, Ludmila, Bootwalla, Moiz S., Hoadley, Katherine A., Jones, Corbin D., Mose, Lisle E., Tan, Donghui, Drummond, Jennifer, Morton, Donna, Sheth, Margi, Fronick, Catrina C., Wilson, Richard K., Penny, Robert, Ramirez, Nilsa C., Huntsman, David, McPherson, Christopher, Malykh, Andrei, Myers, Jerome, Tucker, Kelinda, Staugaitis, Susan M., Sepulveda, Antonia, Desjardins, Laurence, Sastre, Xavier, Lipp, Eric, Sharp, Alexis, Eijckenboom, Wil, Gillis, Ad, Korpershoek, Esther, Looijenga, Leendert, Oosterhuis, Wolter, DiMeco, Francesco, Wach, Sven, Chung, Ki, Martin, Julie, Noushmehr, Houtan, Scarpace, Lisa, Campo, Elias, Van Bang, Nguyen, Colman, Howard, Dottino, Peter R., Breggia, Anne, Bryce, Alan H., Copland, John A., Kendrick, Michael, Rivera, Michael, Ajani, Jaffer A., Gershenwald, Jeffrey, Kakavand, Hojabr, Al-Ahmadie, Hikmat, Smith, Jennifer, Zaren, Howard, Wentzensen, Nicolas, Tcaciuc, Diana, Arnaout, Angel, Engel, Jay, Rassl, Doris M., Urba, Walter, Merola, Roberta, Barnett, Gene, Farver, Carol, Carpino, Guido, Dubina, Michael, Abdel-Rahman, Mohamed H., Cebulla, Colleen M., Nguyen, Phuong, Rai, Karan, Kastl, Alison, Waldmann, Jens, Simon, Ronald, Simko, Jeffry, Steele, Ruth, Jacobus, Laura, Moore, Kathleen, Carlotti, Carlos Gilberto, Kendall, Sara, Bradford, Carol, Peterson, Lisa, DiPersio, John

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Driver Fusions and Their Implications in the Development and Treatment of Human Cancers von Foltz, Steven M., Yu, Lihua, Ferguson, Martin L., Liu, Jia, Heiman, David I., Lawrence, Michael S., Saksena, Gordon, Dhankani, Varsha, Hegde, Apurva M., Li, Jun, Liu, Wenbin, Nissan, Moriah G., Sander, Chris, Wong, Christopher K., Ally, Adrian, Kasaian, Katayoon, Moore, Richard A., Cherniack, Andrew D., Meyerson, Matthew, Baylin, Stephen, Bootwalla, Moiz S., Hoadley, Katherine A., Mose, Lisle E., Hale, Walker, Morton, Donna, Santibanez, Jireh, Wheeler, David A., Fulton, Robert S., Wilson, Richard K., Penny, Robert, Gerken, Mark, Leraas, Kristen M., Huntsman, David, Duffy, Elizabeth R., Berkowitz, Ross, Malykh, Andrei, Iacocca, Mary, Roman-Roman, Sergio, Stern, Marc-Henri, Lipp, Eric, Sharp, Alexis, Delman, Keith, Owonikoko, Taofeek, Gillis, Ad, Korpershoek, Esther, Looijenga, Leendert, DiMeco, Francesco, Chen, Chu, Stoehr, Robert, Bubley, Glenn, Campo, Elias, Martignetti, John A., Breggia, Anne, Kocher, Jean-Pierre, Petersen, Gloria, Smyrk, Thomas, Ajani, Jaffer A., Esmaeli, Bita, Logothetis, Christopher, Rice, David, Sood, Anil, Kefford, Richard, Al-Ahmadie, Hikmat, Miller, Judy, Schiffman, Mark, Wentzensen, Nicolas, Caraman, Irina, Clipca, Adrian, Doruc, Serghei, Stancul, Irina, Albert, Monique, Arnaout, Angel, Bartlett, John, Engel, Jay, Urba, Walter, Marino, Mirella, Barnett, Gene, Farver, Carol, Abdel-Rahman, Mohamed H., Cebulla, Colleen M., Kumar, Bahavna, Rai, Karan, Lechan, Ronald, Graefen, Markus, Simon, Ronald, Tennstedt, Pierre, Glenn, Pat, Simko, Jeffry, Steele, Ruth, Campos, Benito, Rosenthal, Howard G., Adebamowo, Sally N., Giordano, Thomas, Moore, Kathleen, Moxley, Katherine, Shipman, Cassaundra, Wolf, Gregory, Ley, Timothy, Van Tine, Brian, Shmulevich, Ilya

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Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer von Wang, Yumeng, Xu, Xiaoyan, Maglic, Dejan, Dill, Michael T, Mojumdar, Kamalika, Ng, Patrick Kwok-Shing, Jeong, Kang Jin, Tsang, Yiu Huen, Moreno, Daniela, Bhavana, Venkata Hemanjani, Peng, Xinxin, Ge, Zhongqi, Chen, Hu, Li, Jun, Chen, Zhongyuan, Zhang, Huiwen, Han, Leng, Du, Di, Creighton, Chad J, Mills, Gordon B, Camargo, Fernando, Liang, Han

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A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples von Caesar-Johnson, Samantha J., Demchok, John A., Zenklusen, Jean C., Meier, Sam, Kanchi, Rupa S., Lu, Yiling, Ng, Kwok-Shing, Gao, Jianjiong, Heins, Zachary J., Ochoa, Angelica, Schultz, Nikolaus, Zhang, Hongxin, Hayes, D. Neil, Balasundaram, Miruna, Jones, Steven J.M., Lee, Darlene, Mungall, Karen, Cibulskis, Carrie, Schumacher, Steven E., Perou, Amy H., Shi, Yan, Hinoue, Toshinori, Creighton, Chad J., Glenn, Robert, Wang, Min, Schmidt, Heather K., Gardner, Johanna, Morris, Scott, Paulauskis, Joseph, Burnette, Andrew, Le, Xuan, Thorp, Richard, Setdikova, Galiya, Muto, Michael, Devine, Karen, Karlan, Beth Y., Harr, Jodi, Vicha, Ales, Têtu, Bernard, McGraw, Mary, Mariani, Odette, Marks, Jeffrey, Chen, Amy, Olson, Jeffrey J., Ramalingam, Suresh, Calatozzolo, Chiara, Mattei, Luca, Pollo, Bianca, Houck, John, Bueno, Raphael, Girard, Nicolas, Kang, Koo Jeong, Chandan, Vishal, Moser, Catherine, Thompson, R. Houston, Torbenson, Michael, Behrens, Carmen, Lazar, Alexander J., Ramondetta, Lois, Thompson, Timothy, Lee, Kenneth, Saw, Robyn, Spillane, Andrew, Chan, Timothy A., Tien, Nguyen Viet, Park, Joong-Won, Pinto, Peter A., Pass, Harvey, Pirtac, Maria, Sekhon, Harman, Facciolo, Francesco, McKercher, Ginette, Naska, Theresa, Pennell, Nathan A., Williams, Felicia, Seder, Christopher W., Junker, Kerstin, Omberg, Larsson, Becker, Karl-Friedrich, Hilty, Joe, Grizzle, William E., Porten, Sima, Schadendorf, Dirk, Couce, Marta, Schlomm, Thorsten, Olabode, Oluwole, Nelson, Mark, Bathe, Oliver, Disaia, Philip, Kelley, Robin K., Carey, Francis, Forgie, Ian, Herold-Mende, Christel, Bossler, Aaron, Sigmund, Rita, Landrum, Lisa, Luketich, James, Kemp, Rafael, Fantacone-Campbell, J. Leigh, Aredes, Natália D.

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