Whole genome sequencing of canids reveals genomic regions under selection and variants influencing morphology von Plassais, Jocelyn, Kim, Jaemin, Davis, Brian W., Karyadi, Danielle M., Hogan, Andrew N., Harris, Alex C., Decker, Brennan, Parker, Heidi G., Ostrander, Elaine A.

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Inflated expectations: Rare-variant association analysis using public controls von Kim, Jung, Karyadi, Danielle M, Hartley, Stephen W, Zhu, Bin, Wang, Mingyi, Wu, Dongjing, Song, Lei, Armstrong, Gregory T, Bhatia, Smita, Robison, Leslie L, Yasui, Yutaka, Carter, Brian, Sampson, Joshua N, Freedman, Neal D, Goldstein, Alisa M, Mirabello, Lisa, Chanock, Stephen J, Morton, Lindsay M, Savage, Sharon A, Stewart, Douglas R

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Biallelic BRCA2 Mutations Shape the Somatic Mutational Landscape of Aggressive Prostate Tumors von Decker, Brennan, Karyadi, Danielle M., Davis, Brian W., Karlins, Eric, Tillmans, Lori S., Stanford, Janet L., Thibodeau, Stephen N., Ostrander, Elaine A.

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A copy number variant at the KITLG locus likely confers risk for canine squamous cell carcinoma of the digit von Karyadi, Danielle M, Karlins, Eric, Decker, Brennan, vonHoldt, Bridgett M, Carpintero-Ramirez, Gretchen, Parker, Heidi G, Wayne, Robert K, Ostrander, Elaine A

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HOXB13 mutations in a population-based, case-control study of prostate cancer von Stott-Miller, Marni, Karyadi, Danielle M., Smith, Tiffany, Kwon, Erika M., Kolb, Suzanne, Stanford, Janet L., Ostrander, Elaine A.

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Radiation-related genomic profile of papillary thyroid carcinoma after the Chernobyl accident von Morton, Lindsay M, Karyadi, Danielle M, Stewart, Chip, Bogdanova, Tetiana I, Dawson, Eric T, Steinberg, Mia K, Dai, Jieqiong, Hartley, Stephen W, Schonfeld, Sara J, Sampson, Joshua N, Maruvka, Yosef E, Kapoor, Vidushi, Ramsden, Dale A, Carvajal-Garcia, Juan, Perou, Charles M, Parker, Joel S, Krznaric, Marko, Yeager, Meredith, Boland, Joseph F, Hutchinson, Amy, Hicks, Belynda D, Dagnall, Casey L, Gastier-Foster, Julie M, Bowen, Jay, Lee, Olivia, Machiela, Mitchell J, Cahoon, Elizabeth K, Brenner, Alina V, Mabuchi, Kiyohiko, Drozdovitch, Vladimir, Masiuk, Sergii, Chepurny, Mykola, Zurnadzhy, Liudmyla Yu, Hatch, Maureen, Berrington de Gonzalez, Amy, Thomas, Gerry A, Tronko, Mykola D, Getz, Gad, Chanock, Stephen J

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Multiple Independent Genetic Variants in the 8q24 Region Are Associated with Prostate Cancer Risk von Salinas, Claudia A, Kwon, Erika, Carlson, Christopher S, Koopmeiners, Joseph S, Feng, Ziding, Karyadi, Danielle M, Ostrander, Elaine A, Stanford, Janet L

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Association of Megalin Genetic Polymorphisms with Prostate Cancer Risk and Prognosis von Holt, Sarah K, Karyadi, Danielle M, Kwon, Erika M, Stanford, Janet L, Nelson, Peter S, Ostrander, Elaine A

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Polygenic risk scores, radiation treatment exposures and subsequent cancer risk in childhood cancer survivors von Gibson, Todd M., Karyadi, Danielle M., Hartley, Stephen W., Arnold, Michael A., Berrington de Gonzalez, Amy, Conces, Miriam R., Howell, Rebecca M., Kapoor, Vidushi, Leisenring, Wendy M., Neglia, Joseph P., Sampson, Joshua N., Turcotte, Lucie M., Chanock, Stephen J., Armstrong, Gregory T., Morton, Lindsay M.

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ArCH: improving the performance of clonal hematopoiesis variant calling and interpretation von Chan, Irenaeus C C, Panchot, Alex, Schmidt, Evelyn, McNulty, Samantha, Wiley, Brian J, Liu, Jie, Turner, Kimberly, Moukarzel, Lea, Wong, Wendy S W, Tran, Duc, Beeler, J Scott, Batchi-Bouyou, Armel Landry, Machiela, Mitchell J, Karyadi, Danielle M, Krajacich, Benjamin J, Zhao, Junhua, Kruglyak, Semyon, Lajoie, Bryan, Levy, Shawn, Patel, Minal, Kantoff, Philip W, Mason, Christopher E, Link, Daniel C, Druley, Todd E, Stopsack, Konrad H, Bolton, Kelly L

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Comparison against 186 canid whole-genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor von Decker, Brennan, Davis, Brian W, Rimbault, Maud, Long, Adrienne H, Karlins, Eric, Jagannathan, Vidhya, Reiman, Rebecca, Parker, Heidi G, Drögemüller, Cord, Corneveaux, Jason J, Chapman, Erica S, Trent, Jeffery M, Leeb, Tosso, Huentelman, Matthew J, Wayne, Robert K, Karyadi, Danielle M, Ostrander, Elaine A

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In-utero exposure to zidovudine-containing antiretroviral therapy and clonal hematopoiesis in HIV-exposed uninfected newborns von Lin, Shu-Hong, Wang, Youjin, Hartley, Stephen W., Karyadi, Danielle M., Lee, Olivia W., Zhu, Bin, Zhou, Weiyin, Brown, Derek W., Beilstein-Wedel, Erin, Hazra, Rohan, Kacanek, Deborah, Chadwick, Ellen G., Marsit, Carmen J., Poirier, Miriam C., Brummel, Sean S., Chanock, Stephen J., Engels, Eric A., Machiela, Mitchell J.

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The MTAP-CDKN2A Locus Confers Susceptibility to a Naturally Occurring Canine Cancer von SHEARIN, Abigail L, HEDAN, Benoit, DEVAUCHELLE, Patrick, RIMBAULT, Maud, KARYADI, Danielle M, LYNCH, Mary, GALIBERT, Francis, BREEN, Matthew, RUTTEMAN, Gerard R, ANDRE, Catherine, PARKER, Heidi G, OSTRANDER, Elaine A, CADIEU, Edouard, ERICH, Suzanne A, SCHMIDT, Emmett V, FADEN, Daniel L, CULLEN, John, ABADIE, Jerome, KWON, Erika M, GRÖNE, Andrea

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Confirmation of genetic variants associated with lethal prostate cancer in a cohort of men from hereditary prostate cancer families von Karyadi, Danielle M., Zhao, Shanshan, He, Qianchuan, McIntosh, Laura, Wright, Jonathan L., Ostrander, Elaine A., Feng, Ziding, Stanford, Janet L.

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Suggestive genetic linkage to chromosome 11p11.2-q12.2 in hereditary prostate cancer families with primary kidney cancer von Johanneson, Bo, Deutsch, Kerry, McIntosh, Laura, Friedrichsen-Karyadi, Danielle M., Janer, Marta, Kwon, Erika M., Iwasaki, Lori, Hood, Leroy, Ostrander, Elaine A., Stanford, Janet L.

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Germline Missense Variants in the BTNL2 Gene Are Associated with Prostate Cancer Susceptibility von FITZGERALD, Liesel M, KUMAR, Akash, LI HSU, SHENDURE, Jay, STANFORD, Janet L, BOYLE, Evan A, YUZHENG ZHANG, MCINTOSH, Laura M, KOLB, Suzanne, STOTT-MILLER, Marni, SMITH, Tiffany, KARYADI, Danielle M, OSTRANDER, Elaine A

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Somatic copy number deletion of chromosome 22q in papillary thyroid carcinoma von Lee, Olivia W, Karyadi, Danielle M, Hartley, Stephen W, Zhou, Weyin, Machiela, Mitchell J, Zamani, Shahriar A, Zurnadzhy, Liudmyla Yu, Weinstein, John N, Park, Young Joo, Seo, Jeong-Sun, Thomas, Gerry A, Bogdanova, Tetiana I, Tronko, Mykola D, Morton, Lindsay M, Chanock, Stephen J

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Genomic scan of 12 hereditary prostate cancer families having an occurrence of pancreas cancer von Pierce, Brandon L., Friedrichsen-Karyadi, Danielle M., McIntosh, Laura, Deutsch, Kerry, Hood, Lee, Ostrander, Elaine A., Austin, Melissa A., Stanford, Janet L.

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Frequency of Pathogenic Germline Variants in Cancer-Susceptibility Genes in the Childhood Cancer Survivor Study von Kim, Jung, Gianferante, Matthew, Karyadi, Danielle M, Hartley, Stephen W, Frone, Megan N, Luo, Wen, Robison, Leslie L, Armstrong, Gregory T, Bhatia, Smita, Dean, Michael, Yeager, Meredith, Zhu, Bin, Song, Lei, Sampson, Joshua N, Yasui, Yutaka, Leisenring, Wendy M, Brodie, Seth A, de Andrade, Kelvin C, Fortes, Fernanda P, Goldstein, Alisa M, Khincha, Payal P, Machiela, Mitchell J, McMaster, Mary L, Nickerson, Michael L, Oba, Leatrisse, Pemov, Alexander, Pinheiro, Maisa, Rotunno, Melissa, Santiago, Karina, Wegman-Ostrosky, Talia, Diver, W Ryan, Teras, Lauren, Freedman, Neal D, Hicks, Belynda D, Zhu, Bin, Wang, Mingyi, Jones, Kristine, Hutchinson, Amy A, Dagnall, Casey, Savage, Sharon A, Tucker, Margaret A, Chanock, Stephen J, Morton, Lindsay M, Stewart, Douglas R, Mirabello, Lisa

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Whole exome sequencing in 75 high-risk families with validation and replication in independent case-control studies identifies TANGO2, OR5H14, and CHAD as new prostate cancer susce... von Karyadi, Danielle M, Geybels, Milan S, Karlins, Eric, Decker, Brennan, McIntosh, Laura, Hutchinson, Amy, Kolb, Suzanne, McDonnell, Shannon K, Hicks, Belynda, Middha, Sumit, FitzGerald, Liesel M, DeRycke, Melissa S, Yeager, Meredith, Schaid, Daniel J, Chanock, Stephen J, Thibodeau, Stephen N, Berndt, Sonja I, Stanford, Janet L, Ostrander, Elaine A

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