A review on human fecal metabolomics: Methods, applications and the human fecal metabolome database von Karu, Naama, Deng, Lu, Slae, Mordechai, Guo, An Chi, Sajed, Tanvir, Huynh, Hien, Wine, Eytan, Wishart, David S.

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HMDB 5.0: the Human Metabolome Database for 2022 von Wishart, David S, Guo, AnChi, Oler, Eponine, Wang, Fei, Anjum, Afia, Peters, Harrison, Dizon, Raynard, Sayeeda, Zinat, Tian, Siyang, Lee, Brian L, Berjanskii, Mark, Mah, Robert, Yamamoto, Mai, Jovel, Juan, Torres-Calzada, Claudia, Hiebert-Giesbrecht, Mickel, Lui, Vicki W, Varshavi, Dorna, Varshavi, Dorsa, Allen, Dana, Arndt, David, Khetarpal, Nitya, Sivakumaran, Aadhavya, Harford, Karxena, Sanford, Selena, Yee, Kristen, Cao, Xuan, Budinski, Zachary, Liigand, Jaanus, Zhang, Lun, Zheng, Jiamin, Mandal, Rupasri, Karu, Naama, Dambrova, Maija, Schiöth, Helgi B, Greiner, Russell, Gautam, Vasuk

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HMDB 4.0: the human metabolome database for 2018 von Wishart, David S, Feunang, Yannick Djoumbou, Marcu, Ana, Guo, An Chi, Liang, Kevin, Vázquez-Fresno, Rosa, Sajed, Tanvir, Johnson, Daniel, Li, Carin, Karu, Naama, Sayeeda, Zinat, Lo, Elvis, Assempour, Nazanin, Berjanskii, Mark, Singhal, Sandeep, Arndt, David, Liang, Yonjie, Badran, Hasan, Grant, Jason, Serra-Cayuela, Arnau, Liu, Yifeng, Mandal, Rupa, Neveu, Vanessa, Pon, Allison, Knox, Craig, Wilson, Michael, Manach, Claudine, Scalbert, Augustin

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YMDB 2.0: a significantly expanded version of the yeast metabolome database von Ramirez-Gaona, Miguel, Marcu, Ana, Pon, Allison, Guo, An Chi, Sajed, Tanvir, Wishart, Noah A, Karu, Naama, Djoumbou Feunang, Yannick, Arndt, David, Wishart, David S

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CFM-ID 3.0: Significantly Improved ESI-MS/MS Prediction and Compound Identification von Djoumbou-Feunang, Yannick, Pon, Allison, Karu, Naama, Zheng, Jiamin, Li, Carin, Arndt, David, Gautam, Maheswor, Allen, Felicity, Wishart, David S

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CpG-ODN induced antimicrobial immunity in neonatal chicks involves a substantial shift in serum metabolic profiles von Goonewardene, Kalhari Bandara, Karu, Naama, Ahmed, Khawaja Ashfaque, Popowich, Shelly, Chow-Lockerbie, Betty, Ayalew, Lisanework E., Karunarathna, Ruwani, Gunawardana, Thushari, Liu, Mengying, Tikoo, Suresh K., Foldvari, Marianna, Willson, Philip, Mandal, Rupasri, Wishart, David S., Gomis, Susantha

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LC–MS/MS analysis of the central energy and carbon metabolites in biological samples following derivatization by dimethylaminophenacyl bromide von Willacey, Cornelius C.W., Naaktgeboren, Martijn, Lucumi Moreno, Edinson, Wegrzyn, Agnieszka B., van der Es, Daan, Karu, Naama, Fleming, Ronan M.T., Harms, Amy C., Hankemeier, Thomas

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Weight Gain Reduction in Mice Fed Panax ginseng Saponin, a Pancreatic Lipase Inhibitor von Karu, Naama, Reifen, Ram, Kerem, Zohar

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Towards Standards for Human Fecal Sample Preparation in Targeted and Untargeted LC-HRMS Studies von Hosseinkhani, Farideh, Dubbelman, Anne-Charlotte, Karu, Naama, Harms, Amy C., Hankemeier, Thomas

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Severe COVID-19 Is Characterised by Perturbations in Plasma Amines Correlated with Immune Response Markers, and Linked to Inflammation and Oxidative Stress von Karu, Naama, Kindt, Alida, van Gammeren, Adriaan J, Ermens, Anton A M, Harms, Amy C, Portengen, Lutzen, Vermeulen, Roel C H, Dik, Willem A, Langerak, Anton W, van der Velden, Vincent H J, Hankemeier, Thomas

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Plasma Oxylipins and Their Precursors Are Strongly Associated with COVID-19 Severity and with Immune Response Markers von Karu, Naama, Kindt, Alida, Lamont, Lieke, van Gammeren, Adriaan J, Ermens, Anton A M, Harms, Amy C, Portengen, Lutzen, Vermeulen, Roel C H, Dik, Willem A, Langerak, Anton W, van der Velden, Vincent H J, Hankemeier, Thomas

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Association of Altered Plasma Lipidome with Disease Severity in COVID-19 Patients von Zhang, Zhengzheng, Karu, Naama, Kindt, Alida, Singh, Madhulika, Lamont, Lieke, van Gammeren, Adriaan J, Ermens, Anton A M, Harms, Amy C, Portengen, Lutzen, Vermeulen, Roel C H, Dik, Willem A, Langerak, Anton W, van der Velden, Vincent H J, Hankemeier, Thomas

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Differential metabolic host response to pathogens associated with community-acquired pneumonia von den Hartog, Ilona, Karu, Naama, Zwep, Laura B., Voorn, G. Paul, van de Garde, Ewoudt M.W., Hankemeier, Thomas, van Hasselt, J.G. Coen

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A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object von Niehues, Anna, de Visser, Casper, Hagenbeek, Fiona, Karu, Naama, Kindt, Alida, Kulkarni, Purva, Pool, René, Boomsma, Dorret, van Dongen, Jenny, van Gool, Alain, 't Hoen, Peter

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Heritability of Urinary Amines, Organic Acids, and Steroid Hormones in Children von Hagenbeek, Fiona A., van Dongen, Jenny, Pool, René, Harms, Amy C., Roetman, Peter J., Fanos, Vassilios, van Keulen, Britt J., Walker, Brian R., Karu, Naama, Hulshoff Pol, Hilleke E., Rotteveel, Joost, Finken, Martijn J. J., Vermeiren, Robert R. J. M., Kluft, Cornelis, Bartels, Meike, Hankemeier, Thomas, Boomsma, Dorret I.

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Flavor Profiling Using Comprehensive Mass Spectrometry Analysis of Metabolites in Tomato Soups von Leygeber, Simon, Grossmann, Justus L, Diez-Simon, Carmen, Karu, Naama, Dubbelman, Anne-Charlotte, Harms, Amy C, Westerhuis, Johan A, Jacobs, Doris M, Lindenburg, Peter W, Hendriks, Margriet M W B, Ammerlaan, Brenda C H, van den Berg, Marco A, van Doorn, Rudi, Mumm, Roland, Hall, Robert D, Smilde, Age K, Hankemeier, Thomas

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Development of an Untargeted LC-MS Metabolomics Method with Postcolumn Infusion for Matrix Effect Monitoring in Plasma and Feces von Zhu, Pingping, Dubbelman, Anne Charlotte, Hunter, Christie, Genangeli, Michele, Karu, Naama, Harms, Amy, Hankemeier, Thomas

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MiMeDB: the Human Microbial Metabolome Database von Wishart, David S, Oler, Eponine, Peters, Harrison, Guo, AnChi, Girod, Sagan, Han, Scott, Saha, Sukanta, Lui, Vicki W, LeVatte, Marcia, Gautam, Vasuk, Kaddurah-Daouk, Rima, Karu, Naama

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Metabolic profiling of material-limited cell samples by dimethylaminophenacyl bromide derivatization with UPLC-MS/MS analysis von Willacey, Cornelius C.W., Karu, Naama, Harms, Amy C., Hankemeier, Thomas

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Correction to “Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene•GUT Fecal Stabilization” von Isokääntä, Heidi, Pinto da Silva, Lucas, Karu, Naama, Kallonen, Teemu, Aatsinki, Anna-Katariina, Hankemeier, Thomas, Schimmel, Leyla, Diaz, Edgar, Hyötyläinen, Tuulia, Dorrestein, Pieter C., Knight, Rob, Orešič, Matej, Kaddurah-Daouk, Rima, Dickens, Alex M., Lamichhane, Santosh

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