A Whole-Cell Computational Model Predicts Phenotype from Genotype von Karr, Jonathan R., Sanghvi, Jayodita C., Macklin, Derek N., Gutschow, Miriam V., Jacobs, Jared M., Bolival, Benjamin, Assad-Garcia, Nacyra, Glass, John I., Covert, Markus W.

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Ecological integrity is both real and valuable von Karr, James R., Larson, Eric R., Chu, Ellen W.

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Defining and measuring river health von Karr, James R.

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Organizing genome engineering for the gigabase scale von Bartley, Bryan A., Beal, Jacob, Karr, Jonathan R., Strychalski, Elizabeth A.

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BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks von Lang, Paul F, Chebaro, Yassmine, Zheng, Xiaoyue, P Sekar, John A, Shaikh, Bilal, Natale, Darren A, Karr, Jonathan R

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Assessing and Restoring the Health of Urban Streams in the Puget Sound Basin von Morley, Sarah A., Karr, James R.

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The principles of whole-cell modeling von Karr, Jonathan R, Takahashi, Koichi, Funahashi, Akira

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Quantitative Susceptibility Mapping after Sports-Related Concussion von Koch, K M, Meier, T B, Karr, R, Nencka, A S, Muftuler, L T, McCrea, M

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Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models von Karr, Jonathan R, Williams, Alex H, Zucker, Jeremy D, Raue, Andreas, Steiert, Bernhard, Timmer, Jens, Kreutz, Clemens, Wilkinson, Simon, Allgood, Brandon A, Bot, Brian M, Hoff, Bruce R, Kellen, Michael R, Covert, Markus W, Stolovitzky, Gustavo A, Meyer, Pablo

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Biological Integrity: A Long-Neglected Aspect of Water Resource Management von Karr, James R.

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Editorial: Computer-Aided Biodesign Across Scales von Gorochowski, Thomas E, Karr, Jonathan R, Parmeggiani, Fabio, Yordanov, Boyan

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Sustaining living rivers von Karr, James R, Chu, Ellen W

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Simulating single-cell metabolism using a stochastic flux-balance analysis algorithm von Tourigny, David S., Goldberg, Arthur P., Karr, Jonathan R.

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The natural flow regime: a paradigm for river conservation and restoration von Poff, N. LeRoy, Allan, J. David, Bain, Mark B, Karr, James R, Prestegaard, Karen L, Richter, Brian D, Sparks, Richard E, Stromberg, Julie C

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Long-term monitoring reveals widespread and severe declines of understory birds in a protected Neotropical forest von Pollock, Henry S., Toms, Judith D., Tarwater, Corey E., Benson, Thomas J., Karr, James R., Brawn, Jeffrey D.

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Datanator: an integrated database of molecular data for quantitatively modeling cellular behavior von Roth, Yosef D, Lian, Zhouyang, Pochiraju, Saahith, Shaikh, Bilal, Karr, Jonathan R

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REVIVING URBAN STREAMS: LAND USE, HYDROLOGY, BIOLOGY, AND HUMAN BEHAVIOR von Booth, Derek B., Karr, James R., Schauman, Sally, Konrad, Christopher P., Morley, Sarah A., Larson, Marit G., Burges, Stephen J.

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Long‐term monitoring reveals the long lifespans of Neotropical forest landbirds von Pollock, Henry S., Tarwater, Corey E., Karr, James R., Brawn, Jeffrey D.

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Benthic Index of Biotic Integrity (B‐IBI) for Rivers of the Tennessee Valley von Kerans, B. L., Karr, James R.

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Emerging whole-cell modeling principles and methods von Goldberg, Arthur P, Szigeti, Balázs, Chew, Yin Hoon, Sekar, John AP, Roth, Yosef D, Karr, Jonathan R

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