DEGAS: de novo discovery of dysregulated pathways in human diseases von Ulitsky, Igor, Krishnamurthy, Akshay, Karp, Richard M, Shamir, Ron

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Reactive Intermediates in Cytochrome P450 Catalysis von Krest, Courtney M., Onderko, Elizabeth L., Yosca, Timothy H., Calixto, Julio C., Karp, Richard F., Livada, Jovan, Rittle, Jonathan, Green, Michael T.

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Conserved patterns of protein interaction in multiple species von Sharan, R, Suthram, S, Kelley, R.M, Kuhn, T, McCuine, S, Uetz, P, Sittler, T, Karp, R.M, Ideker, T

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The Implicit Hitting Set Approach to Solve Combinatorial Optimization Problems with an Application to Multigenome Alignment von Moreno-Centeno, Erick, Karp, Richard M.

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Visual surveys reveal coral growth in mangrove fringe in a subtropical metropolis von Flowers, Kellie, Golembeski, Paige, Ross, Bailey, Karp, Richard F, Baker, Andrew C

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Census of heat tolerance among Florida's threatened staghorn corals finds resilient individuals throughout existing nursery populations von Cunning, Ross, Parker, Katherine E., Johnson-Sapp, Kelsey, Karp, Richard F., Wen, Alexandra D., Williamson, Olivia M., Bartels, Erich, D'Alessandro, Martine, Gilliam, David S., Hanson, Grace, Levy, Jessica, Lirman, Diego, Maxwell, Kerry, Million, Wyatt C., Moulding, Alison L., Moura, Amelia, Muller, Erinn M., Nedimyer, Ken, Reckenbeil, Brian, van Hooidonk, Ruben, Dahlgren, Craig, Kenkel, Carly, Parkinson, John E., Baker, Andrew C.

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Efficient algorithms for detecting signaling pathways in protein interaction networks von Scott, Jacob, Ideker, Trey, Karp, Richard M, Sharan, Roded

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Conserved Pathways within Bacteria and Yeast as Revealed by Global Protein Network Alignment von Kelley, Brian P., Sharan, Roded, Karp, Richard M., Sittler, Taylor, Root, David E., Stockwell, Brent R., Ideker, Trey

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Genome-wide association data reveal a global map of genetic interactions among protein complexes von Hannum, Gregory, Srivas, Rohith, Guénolé, Aude, van Attikum, Haico, Krogan, Nevan J, Karp, Richard M, Ideker, Trey

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Reconstructing Boolean models of signaling von Sharan, Roded, Karp, Richard M

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eQED: an efficient method for interpreting eQTL associations using protein networks von Ideker, Trey, Suthram, Silpa, Beyer, Andreas, Karp, Richard M, Eldar, Yonina

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A simple algorithm for finding frequent elements in streams and bags von Karp, Richard M, Shenker, Scott, Papadimitriou, Christos H

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Optimization criteria and biological process enrichment in homologous multiprotein modules von Hodgkinson, Luqman, Karp, Richard M.

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Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data von Sharan, Roded, Ideker, Trey, Kelley, Brian, Shamir, Ron, Karp, Richard M

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Topology-free querying of protein interaction networks von Bruckner, Sharon, Hüffner, Falk, Karp, Richard M, Shamir, Ron, Sharan, Roded

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Discovering local structure in gene expression data: the order-preserving submatrix problem von Ben-Dor, Amir, Chor, Benny, Karp, Richard, Yakhini, Zohar

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Heuristic algorithms in computational molecular biology von Karp, Richard M.

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Comparing protein interaction networks via a graph match-and-split algorithm von Narayanan, Manikandan, Karp, Richard M

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SORTING AND SELECTION IN POSETS von DASKALAKIS, Constantinos, KARP, Richard M, MOSSEL, Elchanan, RIESENFELD, Samantha J, VERBIN, Elad

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Pedigree reconstruction using identity by descent von Kirkpatrick, Bonnie, Li, Shuai Cheng, Karp, Richard M, Halperin, Eran

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