The MetaCyc database of metabolic pathways and enzymes - a 2019 update von Caspi, Ron, Billington, Richard, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D

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The MetaCyc database of metabolic pathways and enzymes von Caspi, Ron, Billington, Richard, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D

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The BioCyc collection of microbial genomes and metabolic pathways von Karp, Peter D, Billington, Richard, Caspi, Ron, Fulcher, Carol A, Latendresse, Mario, Kothari, Anamika, Keseler, Ingrid M, Krummenacker, Markus, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne M, Subhraveti, Pallavi

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases von Caspi, Ron, Billington, Richard, Ferrer, Luciana, Foerster, Hartmut, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A, Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S, Karp, Peter D

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The BioCyc Metabolic Network Explorer von Paley, Suzanne, Karp, Peter D.

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases von Caspi, Ron, Altman, Tomer, Dreher, Kate, Fulcher, Carol A., Subhraveti, Pallavi, Keseler, Ingrid M., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Ong, Quang, Paley, Suzanne, Pujar, Anuradha, Shearer, Alexander G., Travers, Michael, Weerasinghe, Deepika, Zhang, Peifen, Karp, Peter D.

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases von Caspi, Ron, Altman, Tomer, Billington, Richard, Dreher, Kate, Foerster, Hartmut, Fulcher, Carol A, Holland, Timothy A, Keseler, Ingrid M, Kothari, Anamika, Kubo, Aya, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A, Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S, Weerasinghe, Deepika, Zhang, Peifen, Karp, Peter D

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Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics von Karp, Peter D., Midford, Peter E., Caspi, Ron, Khodursky, Arkady

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Revisiting the y-ome of Escherichia coli von Moore, Lisa R, Caspi, Ron, Boyd, Dana, Berkmen, Mehmet, Mackie, Amanda, Paley, Suzanne, Karp, Peter D

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Machine learning methods for metabolic pathway prediction von Dale, Joseph M, Popescu, Liviu, Karp, Peter D

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The EcoCyc Database in 2021 von Keseler, Ingrid M., Gama-Castro, Socorro, Mackie, Amanda, Billington, Richard, Bonavides-Martinez, Cesar, Caspi, Ron, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E., Muniz-Rascado, Luis, Ong, Wai Kit, Paley, Suzanne, Santos-Zavaleta, Alberto, Subhraveti, Pallavi, Tierrafria, Victor H., Wolfe, Alan J., Collado-Vides, Julio, Paulsen, Ian T., Karp, Peter D.

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Expansion of the BioCyc collection of pathway/genome databases to 160 genomes von Karp, Peter D., Ouzounis, Christos A., Moore-Kochlacs, Caroline, Goldovsky, Leon, Kaipa, Pallavi, Ahrén, Dag, Tsoka, Sophia, Darzentas, Nikos, Kunin, Victor, López-Bigas, Núria

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MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases von Caspi, Ron, Foerster, Hartmut, Fulcher, Carol A, Kaipa, Pallavi, Krummenacker, Markus, Latendresse, Mario, Paley, Suzanne, Rhee, Seung Y, Shearer, Alexander G, Tissier, Christophe, Walk, Thomas C, Zhang, Peifen, Karp, Peter D

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Treatment with methylnaltrexone is associated with increased survival in patients with advanced cancer von Janku, F., Johnson, L.K., Karp, D.D., Atkins, J.T., Singleton, P.A., Moss, J.

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The MultiOmics Explainer: explaining omics results in the context of a pathway/genome database von Paley, Suzanne, Karp, Peter D

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Evaluation of reaction gap-filling accuracy by randomization von Latendresse, Mario, Karp, Peter D

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The Pathway Tools software von Karp, Peter D., Paley, Suzanne, Romero, Pedro

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The Comparative Genome Dashboard von Paley, Suzanne, Caspi, Ron, O'Maille, Paul, Karp, Peter D

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Optimal metabolic route search based on atom mappings von Latendresse, Mario, Krummenacker, Markus, Karp, Peter D

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The Omics Dashboard for Interactive Exploration of Metabolomics and Multi-Omics Data von Paley, Suzanne, Karp, Peter D

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