Open challenges for microbial network construction and analysis von Faust, Karoline

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From hairballs to hypotheses-biological insights from microbial networks von Röttjers, Lisa, Faust, Karoline

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Microbial interactions: from networks to models von Faust, Karoline, Raes, Jeroen

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CoNet app: inference of biological association networks using Cytoscape von Faust, Karoline, Raes, Jeroen

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Temporal variability in quantitative human gut microbiome profiles and implications for clinical research von Vandeputte, Doris, De Commer, Lindsey, Tito, Raul Y., Kathagen, Gunter, Sabino, João, Vermeire, Séverine, Faust, Karoline, Raes, Jeroen

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Multi-stability and the origin of microbial community types von Gonze, Didier, Lahti, Leo, Raes, Jeroen, Faust, Karoline

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Fast and flexible analysis of linked microbiome data with mako von Röttjers, Lisa, Faust, Karoline

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Publisher Correction: Fast and flexible analysis of linked microbiome data with mako von Röttjers, Lisa, Faust, Karoline

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Computational approaches to predict bacteriophage–host relationships von Edwards, Robert A., McNair, Katelyn, Faust, Karoline, Raes, Jeroen, Dutilh, Bas E.

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Synthetic ecology of the human gut microbiota von Vrancken, Gino, Gregory, Ann C., Huys, Geert R. B., Faust, Karoline, Raes, Jeroen

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Towards a Better Understanding of Microbial Community Dynamics through High-Throughput Cultivation and Data Integration von Faust, Karoline

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Predicting microbial interactions with approaches based on flux balance analysis: an evaluation von Joseph, Clémence, Zafeiropoulos, Haris, Bernaerts, Kristel, Faust, Karoline

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Earth microbial co-occurrence network reveals interconnection pattern across microbiomes von Ma, Bin, Wang, Yiling, Ye, Shudi, Liu, Shan, Stirling, Erinne, Gilbert, Jack A, Faust, Karoline, Knight, Rob, Jansson, Janet K, Cardona, Cesar, Röttjers, Lisa, Xu, Jianming

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Population-level analysis of gut microbiome variation von Falony, Gwen, Joossens, Marie, Vieira-Silva, Sara, Wang, Jun, Darzi, Youssef, Faust, Karoline, Kurilshikov, Alexander, Bonder, Marc Jan, Valles-Colomer, Mireia, Vandeputte, Doris, Tito, Raul Y., Chaffron, Samuel, Rymenans, Leen, Verspecht, Chloë, De Sutter, Lise, Lima-Mendez, Gipsi, D'hoe, Kevin, Jonckheere, Karl, Homola, Daniel, Garcia, Roberto, Tigchelaar, Ettje F., Eeckhaudt, Linda, Fu, Jingyuan, Henckaerts, Liesbet, Zhernakova, Alexandra, Wijmenga, Cisca, Raes, Jeroen

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Microbial co-occurrence relationships in the human microbiome von Faust, Karoline, Sathirapongsasuti, J Fah, Izard, Jacques, Segata, Nicola, Gevers, Dirk, Raes, Jeroen, Huttenhower, Curtis

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Correlation detection strategies in microbial data sets vary widely in sensitivity and precision von Weiss, Sophie, Van Treuren, Will, Lozupone, Catherine, Faust, Karoline, Friedman, Jonathan, Deng, Ye, Xia, Li Charlie, Xu, Zhenjiang Zech, Ursell, Luke, Alm, Eric J, Birmingham, Amanda, Cram, Jacob A, Fuhrman, Jed A, Raes, Jeroen, Sun, Fengzhu, Zhou, Jizhong, Knight, Rob

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Quantifying the impact of ecological memory on the dynamics of interacting communities von Khalighi, Moein, Sommeria-Klein, Guilhem, Gonze, Didier, Faust, Karoline, Lahti, Leo

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Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community von D'hoe, Kevin, Vet, Stefan, Faust, Karoline, Moens, Frédéric, Falony, Gwen, Gonze, Didier, Lloréns-Rico, Verónica, Gelens, Lendert, Danckaert, Jan, De Vuyst, Luc, Raes, Jeroen

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Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes von Bálint, Miklós, Bahram, Mohammad, Eren, A. Murat, Faust, Karoline, Fuhrman, Jed A., Lindahl, Björn, O'Hara, Robert B., Öpik, Maarja, Sogin, Mitchell L., Unterseher, Martin, Tedersoo, Leho

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Genetic correlation network prediction of forest soil microbial functional organization von Ma, Bin, Zhao, Kankan, Lv, Xiaofei, Su, Weiqin, Dai, Zhongmin, Gilbert, Jack A., Brookes, Philip C., Faust, Karoline, Xu, Jianming

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