Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline von Kroll, Karl W., Mokaram, Nima E., Pelletier, Alexander R., Frankhouser, David E., Westphal, Maximillian S., Stump, Paige A., Stump, Cameron L., Bundschuh, Ralf, Blachly, James S., Yan, Pearlly

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MuCor: mutation aggregation and correlation von Kroll, Karl W, Eisfeld, Ann-Katherin, Lozanski, Gerard, Bloomfield, Clara D, Byrd, John C, Blachly, James S

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MonoSeq Variant Caller Reveals Novel Mononucleotide Run Indel Mutations in Tumors with Defective DNA Mismatch Repair von Walker, Christopher J., Miranda, Mario A., O'Hern, Matthew J., Blachly, James S., Moyer, Cassandra L., Ivanovich, Jennifer, Kroll, Karl W., Eisfeld, Ann-Kathrin, Sapp, Caroline E., Mutch, David G., Cohn, David E., Bundschuh, Ralf, Goodfellow, Paul J

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Mutations in the CCND1 and CCND2 genes are frequent events in adult patients with t(8;21)(q22;q22) acute myeloid leukemia von Eisfeld, A-K, Kohlschmidt, J, Schwind, S, Nicolet, D, Blachly, J S, Orwick, S, Shah, C, Bainazar, M, Kroll, K W, Walker, C J, Carroll, A J, Powell, B L, Stone, R M, Kolitz, J E, Baer, M R, de la Chapelle, A, Mrózek, K, Byrd, J C, Bloomfield, C D

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Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline von Karl W. Kroll, Nima E. Mokaram, Alexander R. Pelletier, David E. Frankhouser, Maximillian S. Westphal, Paige A. Stump, Cameron L. Stump, Ralf Bundschuh, James S. Blachly, Pearlly Yan

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Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline von Kroll, Karl W, Mokaram, Nima E, Pelletier, Alexander R, Frankhouser, David E, Westphal, Maximillian S, Stump, Paige A, Stump, Cameron L, Bundschuh, Ralf, Blachly, James S, Yan, Pearlly

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In situ secondary organic aerosol formation from ambient pine forest air using an oxidation flow reactor von Palm, Brett B, Campuzano-Jost, Pedro, Ortega, Amber M, Day, Douglas A, Kaser, Lisa, Jud, Werner, Karl, Thomas, Hansel, Armin, Hunter, James F, Cross, Eben S, Kroll, Jesse H, Peng, Zhe, Brune, William H, Jimenez, Jose L

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Comprehensive characterization of atmospheric organic carbon at a forested site von Hunter, James F., Day, Douglas A., Palm, Brett B., Yatavelli, Reddy L. N., Chan, Arthur W. H., Kaser, Lisa, Cappellin, Luca, Hayes, Patrick L., Cross, Eben S., Carrasquillo, Anthony J., Campuzano-Jost, Pedro, Stark, Harald, Zhao, Yunliang, Hohaus, Thorsten, Smith, James N., Hansel, Armin, Karl, Thomas, Goldstein, Allen H., Guenther, Alex, Worsnop, Douglas R., Thornton, Joel A., Heald, Colette L., Jimenez, Jose L., Kroll, Jesse H.

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Constraining nucleation, condensation, and chemistry in oxidation flow reactors using size-distribution measurements and aerosol microphysical modeling von Hodshire, Anna L, Palm, Brett B, Alexander, M. Lizabeth, Bian, Qijing, Campuzano-Jost, Pedro, Cross, Eben S, Day, Douglas A, de Sá, Suzane S, Guenther, Alex B, Hansel, Armin, Hunter, James F, Jud, Werner, Karl, Thomas, Kim, Saewung, Kroll, Jesse H, Park, Jeong-Hoo, Peng, Zhe, Seco, Roger, Smith, James N, Jimenez, Jose L, Pierce, Jeffrey R

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The ATLAS Simulation Infrastructure von Abdesselam, A., Alviggi, M. G., Banfi, D., Bell, W. H., Bianchi, R. M., Bohm, J., Boldea, V., Borjanovic, I., Braem, A., Branchini, P., Brelier, B., Bruni, A., Bunse, M., Caballero, J., Cerrito, L., Conta, C., Dam, M., Darlea, G. L., De Pedis, D., Dehchar, M., Del Peso, J., Deng, J., Diaz, M. A., do Vale, M. A. B., Elles, S., Epp, B., Ferencei, J., Fiedler, F., Filthaut, F., Gaudio, G., Giakoumopoulou, V., Gjelsten, B. K., Glitza, K. W., Gosselink, M., Gray, H. M., Gupta, A., Hakobyan, H., Hayward, H. S., Hertenberger, R., Johansen, M., Kantserov, V. A., Kataoka, M., Klimentov, A., Koll, J., Kowalski, H., Lacasta, C., Lankford, A. J., Laplace, S., Le Vine, M., Liberti, B., Lockwitz, S., Lytken, E., Macana Goia, J. A., Mameghani, R., Mamuzic, J., McCubbin, N. A., McGlone, H., Moore, R. W., Nelson, T. K., Nicquevert, B., Nisius, R., Oren, Y., Ouraou, A., Owen, M., Panikashvili, N., Perez Codina, E., Petit, E., Rammes, M., Redlinger, G., Romanov, V. M., Rosenbaum, G. A., Rozanov, A., Ruan, X., Schacht, P., Serin, L., Simak, V., Skovpen, K., Slavicek, T., Soffer, A., Spousta, M., Ströhmer, R., Taylor, G. N., Topfel, C., Torró Pastor, E., Uchida, K., Vankov, P., Villa, M., Voss, R., Vrba, V., Vuillermet, R., Wagner, P., Weiser, C., Wellenstein, H., Wendler, S., Whittington, D., Wicek, F., Wielers, M., Wright, C., Yang, Z., Zanello, L.

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Search for direct third-generation squark pair production in final states with missing transverse momentum and two b-jets in s√= 8 TeV pp collisions with the ATLAS detector von Onofre, A., Castro, Nuno Filipe Silva Fernandes, ATLAS Collaboration

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Charged-particle multiplicities in pp interactions measured with the ATLAS detector at the LHC von Abdallah, J, Almond, J, Barnett, B M, Benhammou, Y, Benoit, M, Bernat, P, Bernius, C, Bini, C, Black, K M, Brandt, G, Braun, H M, Buckingham, R M, Coccaro, A, Cogan, J G, Colijn, A P, Da Silva, P V M, Dittus, F, Dobson, M, Dohmae, T, Dotti, A, Favareto, A, Fedorko, W, Gentile, S, Giokaris, N, Gorbounov, P A, Gorski, B T, Grishkevich, Y V, Guicheney, C, Gusakov, Y, Hadley, D R, Haefner, P, Hansen, J R, Hauff, D, Houlden, M A, Hristova, I, Huffman, T B, Huseynov, N, Iwasaki, H, Kapliy, A, Kiryunin, A E, Kowalewski, R, Lenzi, B, Lester, C G, Liberti, B, Linnemann, J T, Manjavidze, I D, Marroquim, F, McCarthy, R L, Mcfayden, J A, Mendoza Navas, L, Moeller, V, Mount, R, Mueller, K, Nakahama, Y, Nakano, I, Nebot, E, Nunes Hanninger, G, Olszewski, A, Pérez García-Estañ, M T, Persembe, S, Policicchio, A, Polychronakos, V, Psoroulas, S, Reeves, K, Romeo, G, Ros, E, Rossi, L P, Rozen, Y, Salt, J, Schwanenberger, C, Searcy, J, Seidel, S C, Seman, M, Sidoti, A, Soni, N, Sorbi, M, Stanek, R W, Stockton, M C, Takeda, H, Tanaka, S, Tappern, G P, Testa, M, Toczek, B, Turecek, D, van der Poel, E, van der Ster, D, Vilucchi, E, Vitale, A, Voss, R, Watts, S, Wells, P S, Wheeler-Ellis, S J, Wilkens, H G, Will, J Z, Yorita, K, Yoshida, R, Zerwas, D, Zilka, B, Ziolkowski, M, zur Nedden, M

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Measurement of the centrality dependence of J/ψ yields and observation of Z production in lead–lead collisions with the ATLAS detector at the LHC von Abreu, H., Ahsan, M., Aielli, G., Amako, K., Austin, N., Bachas, K., Bain, T., Baker, M.D., Barak, L., Barklow, T., Bernat, P., Buttinger, W., Castro, N.F., Cheplakov, A., Cheu, E., Childers, J.T., Chromek-Burckhart, D., Clifft, R.W., Côté, D., Degenhardt, J., Düren, M., Fabbri, L., Fanti, M., Fedin, O.L., Feligioni, L., Gagliardi, G., Gauthier, L., George, S., Glasman, C., Gollub, N.P., Gomes, A., Gouighri, M., Goulette, M.P., Goussiou, A.G., Graziani, E., Gutierrez, P., Gutzwiller, O., Gwenlan, C., Haefner, P., Hara, K., Harrington, R.D., Homma, Y., Hsu, S.-C., Huffman, T.B., Ikeno, M., Jen-La Plante, I., Kama, S., Ketterer, C., Klaiber-Lodewigs, J., Kondo, T., Kummer, C., La Rosa, A., Lacker, H., Lari, T., Lee, H., Leggett, C., Leite, M.A.L., Lenzi, B., Levin, D., Li, H., Lopez Mateos, D., Lutz, G., Macina, D., Malecki, Pa, Mashimo, T., Masubuchi, T., Maxfield, S.J., Mora Herrera, C., Norton, P.R., Nugent, I.M., O'Neil, D.C., Ohska, T.K., Olszowska, J., Panitkin, S., Pralavorio, P., Price, D., Ragusa, F., Rensch, B., Schmitz, M., Skvorodnev, N., Snyder, S., Spurlock, B., Stroynowski, R., Susinno, G., Taiblum, N., Tompkins, L., Troncon, C., Viel, S., Virzi, J., Vlasak, M., Wagner, W., Wakabayashi, J., Wang, R., Wenig, S., Wu, X., Wunstorf, R., Xaplanteris, L., Zhan, Z., Zhang, Z., Zobernig, G.

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Measurement of top quark polarization in top-antitop events from proton-proton collisions at √s=7  TeV using the ATLAS detector von Aad, G, Abajyan, T, Abbott, B, Abdallah, J, Abdel Khalek, S, Abdinov, O, Aben, R, Abi, B, Abolins, M, AbouZeid, O S, Abramowicz, H, Abreu, H, Abulaiti, Y, Acharya, B S, Adamczyk, L, Adams, D L, Addy, T N, Adelman, J, Adomeit, S, Adye, T, Aefsky, S, Agatonovic-Jovin, T, Aguilar-Saavedra, J A, Agustoni, M, Ahlen, S P, Ahmad, A, Ahsan, M, Aielli, G, Åkesson, T P A, Akimoto, G, Akimov, A V, Alam, M A, Albert, J, Albrand, S, Alconada Verzini, M J, Aleksa, M, Aleksandrov, I N, Alessandria, F, Alexa, C, Alexander, G, Alexandre, G, Alexopoulos, T, Alhroob, M, Aliev, M, Alimonti, G, Alio, L, Alison, J, Allbrooke, B M M, Allison, L J, Allport, P P, Allwood-Spiers, S E, Almond, J, Aloisio, A, Alon, R, Alonso, A, Alonso, F, Altheimer, A, Alvarez Gonzalez, B, Alviggi, M G, Amako, K, Amaral Coutinho, Y, Amelung, C, Ammosov, V V, Amor Dos Santos, S P, Amorim, A, Amoroso, S, Amram, N, Anastopoulos, C, Ancu, L S, Andari, N, Andeen, T, Anders, C F, Anders, G, Anderson, K J, Andreazza, A, Andrei, V, Anduaga, X S, Angelidakis, S, Anger, P, Angerami, A, Anghinolfi, F, Anisenkov, A V, Anjos, N, Annovi, A, Antonaki, A, Antonelli, M, Antonov, A, Antos, J, Anulli, F, Aoki, M, Aperio Bella, L, Apolle, R, Arabidze, G, Aracena, I, Arai, Y, Arce, A T H, Arfaoui, S, Arguin, J-F, Argyropoulos, S, Arik, E

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Search for New Particles in Two-Jet Final States in 7 TeV Proton-Proton Collisions with the ATLAS Detector at the LHC von Onofre, A., Castro, Nuno Filipe Silva Fernandes, ATLAS Collaboration

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Measurement of the top quark pair production charge asymmetry in proton-proton collisions at [SQRT]s = 7 TeV using the ATLAS detector von Åkesson, T P, A, Alvarez Gonzalez, B, Amor Dos Santos, S P, Baranov, S P, Bentvelsen, S, Berger, N, Bortfeldt, J, Bressler, S, Buda, S I, Bunse, M, Burke, S, Calkins, R, Chilingarov, A, Chiodini, G, Cindro, V, Costanzo, D, Crescioli, F, Crosetti, G, Dobson, E, Dohmae, T, Doria, A, Ducu, O A, Ernst, M, Evans, H, Fabbri, L, Fernando, W, Giovannini, P, Grossi, G C, Hanke, P, Hellman, S, Hernández Jiménez, Y, Hsu, P J, Jen-la Plante, I, Kagan, H, Kirk, J, Klok, P F, Korolkov, I, Kurumida, R, Kuwertz, E S, Kwee, R, Lavrijsen, W, Lefebvre, M, Linde, F, Lipniacka, A, Loevschall-jensen, A E, Long, J D, Lukas, W, Lundberg, J, Maeno, M, Manousakis-katsikakis, A, Masik, J, Mc Goldrick, G, Menke, S, Moles-valls, R, Monnier, E, Morettini, P, Ottersbach, J P, Pasqualucci, E, Passeri, A, Patel, N D, Pedraza Lopez, S, Plucinski, P, Purohit, M, Quayle, W B, Rembser, C, Roda, C, Rolli, S, Rusakovich, N A, Sartisohn, G, Scannicchio, D A, Simmons, B, Simoniello, R, Smirnova, O, Snyder, S, Soh, D A, Spreitzer, T, Starovoitov, P, Stoebe, M, Su, D, Sutton, M R, Tan, K G, Tanaka, J, Thoma, S, Tibbetts, M J, Tisserant, S, Torres, H, Uhlenbrock, M, Vassilakopoulos, V I, Vetterli, M C, Wakabayashi, J, Wang, J, White, S, Wicke, D, Williams, S, Xella, S, Yoshihara, K, Yuan, L, Zimmermann, C, Zitoun, R, Zobernig, G

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Search for stable hadronising squarks and gluinos with the ATLAS experiment at the LHC von Aad, G., Aderholz, M., Adye, T., Baker, O.K., Bell, W.H., Bensinger, J.R., Bindi, M., Bitenc, U., Boehler, M., Bouhova-Thacker, E.V., Bousson, N., Brubaker, E., Budagov, I.A., Bunse, M., Capriotti, D., Cardarelli, R., Carter, A.A., Casadei, D., Cazzato, A., Chen, S., Christidi, I.A., Cwetanski, P., Dedovich, D.V., Dolejsi, J., Felzmann, C.U., Formica, A., Gallas, M.V., Gilbert, L.M., Gillberg, D., Golling, T., Gornicki, E., Gray, J.A., Hasegawa, S., Johansen, M., Kabachenko, V.V., Katzy, J., King, R.S.B., Knue, A., Ko, B.R., Koffas, T., Kotov, S., La Rosa, A., Larner, A., Le Dortz, O., Liu, D., Loken, J., Maio, A., Malyshev, V., Marx, M., Mazzoni, E., Mclaughlan, T., Meade, A., Mendoza Navas, L., Miralles Verge, L., Muenstermann, D., Nanava, G., Niedercorn, F., Padilla Aranda, C., Paolone, V., Pastore, Fr, Pataraia, S., Petridou, C., Porter, R., Psoroulas, S., Read, A.L., Rodriguez Garcia, Y., Romaniouk, A., Rossi, E., Rothberg, J., Sampsonidis, D., Savinov, V., Schmitt, C., Schumacher, M., Sevior, M.E., Shabalina, E., Shao, Q.T., Sloan, T.J., Smakhtin, V., Smirnova, L.N., Snesarev, A.A., Stugu, B., Soh, D.A., Sushkov, S., Sykora, T., Tafirout, R., Teng, P.K., Todorova-Nova, S., Tompkins, L., Ukegawa, F., Urrejola, P., Vannucci, F., Veneziano, S., Vincter, M.G., Viret, S., Vlachos, S., Weiser, C., Wenaus, T., Whitaker, S.P., Ye, J., Zhang, J.

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Measurement of the top quark charge in pp collisions at s√= 7 TeV with the ATLAS detector von Onofre, A., Castro, Nuno Filipe Silva Fernandes, ATLAS Collaboration

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Search for Dark Matter in Events with Missing Transverse Momentum and a Higgs Boson Decaying to Two Photons in pp Collisions at sqrt[s]=8 TeV with the ATLAS Detector von Aad, G, Abbott, B, Abdallah, J, Abdinov, O, Aben, R, Abolins, M, AbouZeid, O S, Abramowicz, H, Abreu, H, Abreu, R, Abulaiti, Y, Acharya, B S, Adamczyk, L, Adams, D L, Adelman, J, Adomeit, S, Adye, T, Affolder, A A, Agatonovic-Jovin, T, Aguilar-Saavedra, J A, Ahlen, S P, Ahmadov, F, Aielli, G, Akerstedt, H, Åkesson, T P A, Akimoto, G, Akimov, A V, Alberghi, G L, Albert, J, Albrand, S, Alconada Verzini, M J, Aleksa, M, Aleksandrov, I N, Alexa, C, Alexander, G, Alexopoulos, T, Alhroob, M, Alimonti, G, Alio, L, Alison, J, Alkire, S P, Allbrooke, B M M, Allport, P P, Aloisio, A, Alonso, A, Alonso, F, Alpigiani, C, Altheimer, A, Alvarez Gonzalez, B, Álvarez Piqueras, D, Alviggi, M G, Amadio, B T, Amako, K, Amaral Coutinho, Y, Amelung, C, Amidei, D, Amor Dos Santos, S P, Amorim, A, Amoroso, S, Amram, N, Amundsen, G, Anastopoulos, C, Ancu, L S, Andari, N, Andeen, T, Anders, C F, Anders, G, Anders, J K, Anderson, K J, Andreazza, A, Andrei, V, Angelidakis, S, Angelozzi, I, Anger, P, Angerami, A, Anghinolfi, F, Anisenkov, A V, Anjos, N, Annovi, A, Antonelli, M, Antonov, A, Antos, J, Anulli, F, Aoki, M, Aperio Bella, L, Arabidze, G, Arai, Y, Araque, J P, Arce, A T H, Arduh, F A, Arguin, J-F, Argyropoulos, S, Arik, M, Armbruster, A J, Arnaez, O, Arnal, V, Arnold, H, Arratia, M, Arslan, O, Artamonov, A

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Search for New Phenomena in Dijet Angular Distributions in Proton-Proton Collisions at sqrt[s]=8 TeV Measured with the ATLAS Detector von Aad, G, Abbott, B, Abdallah, J, Abdinov, O, Aben, R, Abolins, M, AbouZeid, O S, Abramowicz, H, Abreu, H, Abreu, R, Abulaiti, Y, Acharya, B S, Adamczyk, L, Adams, D L, Adelman, J, Adomeit, S, Adye, T, Affolder, A A, Agatonovic-Jovin, T, Aguilar-Saavedra, J A, Ahlen, S P, Ahmadov, F, Aielli, G, Akerstedt, H, Åkesson, T P A, Akimoto, G, Akimov, A V, Alberghi, G L, Albert, J, Albrand, S, Alconada Verzini, M J, Aleksa, M, Aleksandrov, I N, Alexa, C, Alexander, G, Alexopoulos, T, Alhroob, M, Alimonti, G, Alio, L, Alison, J, Alkire, S P, Allbrooke, B M M, Allport, P P, Aloisio, A, Alonso, A, Alonso, F, Alpigiani, C, Altheimer, A, Alvarez Gonzalez, B, Álvarez Piqueras, D, Alviggi, M G, Amadio, B T, Amako, K, Amaral Coutinho, Y, Amelung, C, Amidei, D, Amor Dos Santos, S P, Amorim, A, Amoroso, S, Amram, N, Amundsen, G, Anastopoulos, C, Ancu, L S, Andari, N, Andeen, T, Anders, C F, Anders, G, Anders, J K, Anderson, K J, Andreazza, A, Andrei, V, Angelidakis, S, Angelozzi, I, Anger, P, Angerami, A, Anghinolfi, F, Anisenkov, A V, Anjos, N, Annovi, A, Antonelli, M, Antonov, A, Antos, J, Anulli, F, Aoki, M, Aperio Bella, L, Arabidze, G, Arai, Y, Araque, J P, Arce, A T H, Arduh, F A, Arguin, J-F, Argyropoulos, S, Arik, M, Armbruster, A J, Arnaez, O, Arnal, V, Arnold, H, Arratia, M, Arslan, O, Artamonov, A

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