Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants von Parker, Stephen C. J., Stitzel, Michael L., Taylor, D. Leland, Orozco, Jose Miguel, Erdos, Michael R., Akiyama, Jennifer A., van Bueren, Kelly Lammerts, Chines, Peter S., Narisu, Narisu, Black, Brian L., Visel, Axel, Pennacchio, Len A., Collins, Francis S.

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Genetic regulatory signatures underlying islet gene expression and type 2 diabetes von Varshney, Arushi, Scott, Laura J., Welch, Ryan P., Erdos, Michael R., Chines, Peter S., Narisu, Narisu, Albanus, Ricardo D’O., Orchard, Peter, Wolford, Brooke N., Kursawe, Romy, Vadlamudi, Swarooparani, Cannon, Maren E., Didion, John P., Hensley, John, Kirilusha, Anthony, Bonnycastle, Lori L., Taylor, D. Leland, Watanabe, Richard, Mohlke, Karen L., Boehnke, Michael, Collins, Francis S., Parker, Stephen C. J., Stitzel, Michael L.

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Maturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection von Wu, Xueling, Zhang, Zhenhai, Schramm, Chaim A, Joyce, M Gordon, Kwon, Young Do, Zhou, Tongqing, Sheng, Zizhang, Zhang, Baoshan, O'Dell, Sijy, McKee, Krisha, Georgiev, Ivelin S, Chuang, Gwo-Yu, Longo, Nancy S, Lynch, Rebecca M, Saunders, Kevin O, Soto, Cinque, Srivatsan, Sanjay, Yang, Yongping, Bailer, Robert T, Louder, Mark K, Mullikin, James C, Connors, Mark, Kwong, Peter D, Mascola, John R, Shapiro, Lawrence

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Whole-genome sequencing identifies a recurrent functional synonymous mutation in melanoma von Gartner, Jared J., Parker, Stephen C. J., Prickett, Todd D., Dutton-Regester, Ken, Stitzel, Michael L., Lin, Jimmy C., Davis, Sean, Simhadri, Vijaya L., Jha, Sujata, Katagiri, Nobuko, Gotea, Valer, Teer, Jamie K., Wei, Xiaomu, Morken, Mario A., Bhanot, Umesh K., Chen, Guo, Elnitski, Laura L., Davies, Michael A., Gershenwald, Jeffrey E., Carter, Hannah, Karchin, Rachel, Robinson, William, Robinson, Steven, Rosenberg, Steven A., Collins, Francis S., Parmigiani, Giovanni, Komar, Anton A., Kimchi-Sarfaty, Chava, Hayward, Nicholas K., Margulies, Elliott H., Samuels, Yardena

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Mining the antibodyome for HIV-1-neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains von Zhu, Jiang, Ofek, Gilad, Yang, Yongping, Zhang, Baoshan, Louder, Mark K., Lu, Gabriel, McKee, Krisha, Pancera, Marie, Skinner, Jeff, Zhang, Zhenhai, Parks, Robert, Eudailey, Joshua, Lloyd, Krissey E., Blinn, Julie, Alam, S. Munir, Haynes, Barton F., Simek, Melissa, Burton, Dennis R., Koff, Wayne C., Mullikin, James C., Mascola, John R., Shapiro, Lawrence, Kwong, Peter D.

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Analysis of immunoglobulin transcripts and hypermutation following SHIVAD8 infection and protein-plus-adjuvant immunization von Francica, Joseph R., Sheng, Zizhang, Zhang, Zhenhai, Nishimura, Yoshiaki, Shingai, Masashi, Ramesh, Akshaya, Keele, Brandon F., Schmidt, Stephen D., Flynn, Barbara J., Darko, Sam, Lynch, Rebecca M., Yamamoto, Takuya, Matus-Nicodemos, Rodrigo, Wolinsky, David, Nason, Martha, Valiante, Nicholas M., Malyala, Padma, De Gregorio, Ennio, Barnett, Susan W., Singh, Manmohan, O’Hagan, Derek T., Koup, Richard A., Mascola, John R., Martin, Malcolm A., Kepler, Thomas B., Douek, Daniel C., Shapiro, Lawrence, Seder, Robert A.

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Longitudinal shift in diabetic wound microbiota correlates with prolonged skin defense response von Grice, Elizabeth A., Snitkin, Evan S., Yockey, Laura J., Bermudez, Dustin M., NISC Comparative Sequencing Program, Liechty, Kenneth W., Segre, Julia A., Gordon, Jeffrey I.

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De novo identification of VRC01 class HIV-1–neutralizing antibodies by next-generation sequencing of B-cell transcripts von Zhu, Jiang, Wu, Xueling, Zhang, Baoshan, McKee, Krisha, O'Dell, Sijy, Soto, Cinque, Zhou, Tongqing, Casazza, Joseph P., Mullikin, James C., Kwong, Peter D., Mascola, John R., Shapiro, Lawrence

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Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii von Snitkin, Evan S., Zelazny, Adrian M., Montero, Clemente I., Stock, Frida, Mijares, Lilia, Murray, Patrick R., Segre, Julie A.

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Dosage compensation and DNA methylation landscape of the X chromosome in mouse liver von Duncan, Christopher G., Grimm, Sara A., Morgan, Daniel L., Bushel, Pierre R., Bennett, Brian D., Roberts, John D., Tyson, Frederick L., Merrick, B. Alex, Wade, Paul A.

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Circadian changes in long noncoding RNAs in the pineal gland von Coon, Steven L, Munson, Peter J, Cherukuri, Praveen F, Sugden, David, Rath, Martin F, Møller, Morten, Clokie, Samuel J. H, Fu, Cong, Olanich, Mary E, Rangel, Zoila, Werner, Thomas, Mullikin, James C, Klein, David C, Benjamin, Betty, Blakesley, Robert, Bouffard, Gerry, Brooks, Shelise, Chu, Grace, Coleman, Holly, Dekhtyar, Mila, Gregory, Michael, Guan, Xiaobin, Gupta, Jyoti, Han, Joel, Hargrove, April, Ho, Shi-ling, Johnson, Taccara, Legaspi, Richelle, Lovett, Sean, Maduro, Quino, Masiello, Cathy, Maskeri, Baishali, McDowell, Jenny, Montemayor, Casandra, Novotny, Betsy, Park, Morgan, Riebow, Nancy, Schandler, Karen, Schmidt, Brian, Sison, Christina, Stantripop, Mal, Thomas, James, Vemulapalli, Meg, Young, Alice

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Specific inactivation of two immunomodulatory SIGLEC genes during human evolution von Wang, Xiaoxia, Mitra, Nivedita, Secundino, Ismael, Banda, Kalyan, Cruz, Pedro, Padler-Karavani, Vered, Verhagen, Andrea, Reid, Chris, Lari, Martina, Rizzi, Ermanno, Balsamo, Carlotta, Corti, Giorgio, De Bellis, Gianluca, Longo, Laura, Beggs, William, Caramelli, David, Tishkoff, Sarah A, Hayakawa, Toshiyuki, Green, Eric D, Mullikin, James C, Nizet, Victor, Bui, Jack, Varki, Ajit, Benjamin, Betty, Blakesley, Robert, Bouffard, Gerry, Brooks, Shelise, Chu, Grace, Coleman, Holly, Dekhtyar, Mila, Gregory, Michael, Guan, Xiaobin, Gupta, Jyoti, Han, Joel, Hargrove, April, Ho, Shi-ling, Johnson, Taccara, Legaspi, Richelle, Lovett, Sean, Maduro, Quino, Masiello, Cathy, Maskeri, Baishali, McDowell, Jenny, Montemayor, Casandra, Novotny, Betsy, Park, Morgan, Riebow, Nancy, Schandler, Karen, Schmidt, Brian, Sison, Christina, Stantripop, Mal, Thomas, James, Vemulapalli, Meg, Young, Alice

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Biogeography and individuality shape function in the human skin metagenome von Oh, Julia, Byrd, Allyson L., Deming, Clay, Conlan, Sean, Kong, Heidi H., Segre, Julia A.

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Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies von Doria-Rose, Nicole A., Schramm, Chaim A., Gorman, Jason, Moore, Penny L., Bhiman, Jinal N., DeKosky, Brandon J., Ernandes, Michael J., Georgiev, Ivelin S., Kim, Helen J., Pancera, Marie, Staupe, Ryan P., Altae-Tran, Han R., Bailer, Robert T., Crooks, Ema T., Cupo, Albert, Druz, Aliaksandr, Garrett, Nigel J., Hoi, Kam H., Kong, Rui, Louder, Mark K., Longo, Nancy S., McKee, Krisha, Nonyane, Molati, O’Dell, Sijy, Roark, Ryan S., Rudicell, Rebecca S., Schmidt, Stephen D., Sheward, Daniel J., Soto, Cinque, Wibmer, Constantinos Kurt, Yang, Yongping, Zhang, Zhenhai, Mullikin, James C., Binley, James M., Sanders, Rogier W., Wilson, Ian A., Moore, John P., Ward, Andrew B., Georgiou, George, Williamson, Carolyn, Abdool Karim, Salim S., Morris, Lynn, Kwong, Peter D., Shapiro, Lawrence, Mascola, John R.

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Integrated genomic, epidemiologic investigation of Candida auris skin colonization in a skilled nursing facility von Proctor, Diana M., Dangana, Thelma, Sexton, D. Joseph, Fukuda, Christine, Yelin, Rachel D., Stanley, Mary, Bell, Pamela B., Baskaran, Sangeetha, Deming, Clay, Chen, Qiong, Conlan, Sean, Park, Morgan, Welsh, Rory M., Vallabhaneni, Snigdha, Chiller, Tom, Forsberg, Kaitlin, Black, Stephanie R., Pacilli, Massimo, Kong, Heidi H., Lin, Michael Y., Schoeny, Michael E., Litvintseva, Anastasia P., Segre, Julia A., Hayden, Mary K.

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Topographic diversity of fungal and bacterial communities in human skin von Findley, Keisha, Oh, Julia, Yang, Joy, Conlan, Sean, Deming, Clayton, Meyer, Jennifer A., Schoenfeld, Deborah, Nomicos, Effie, Park, Morgan, Kong, Heidi H., Segre, Julia A.

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Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus von Liao, Hua-Xin, Lynch, Rebecca, Zhou, Tongqing, Gao, Feng, Alam, S. Munir, Boyd, Scott D., Fire, Andrew Z., Roskin, Krishna M., Schramm, Chaim A., Zhang, Zhenhai, Zhu, Jiang, Shapiro, Lawrence, Mullikin, James C., Gnanakaran, S., Hraber, Peter, Wiehe, Kevin, Kelsoe, Garnett, Yang, Guang, Xia, Shi-Mao, Montefiori, David C., Parks, Robert, Lloyd, Krissey E., Scearce, Richard M., Soderberg, Kelly A., Cohen, Myron, Kamanga, Gift, Louder, Mark K., Tran, Lillian M., Chen, Yue, Cai, Fangping, Chen, Sheri, Moquin, Stephanie, Du, Xiulian, Joyce, M. Gordon, Srivatsan, Sanjay, Zhang, Baoshan, Zheng, Anqi, Shaw, George M., Hahn, Beatrice H., Kepler, Thomas B., Korber, Bette T. M., Kwong, Peter D., Mascola, John R., Haynes, Barton F.

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Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis von Kong, Heidi H, Oh, Julia, Deming, Clay, Conlan, Sean, Grice, Elizabeth A, Beatson, Melony A, Nomicos, Effie, Polley, Eric C, Komarow, Hirsh D, Murray, Patrick R, Turner, Maria L, Segre, Julia A

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Expanded skin virome in DOCK8-deficient patients von Tirosh, Osnat, Conlan, Sean, Deming, Clay, Lee-Lin, Shih-Queen, Huang, Xin, Su, Helen C., Freeman, Alexandra F., Segre, Julia A., Kong, Heidi H.

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Exome sequencing of serous endometrial tumors identifies recurrent somatic mutations in chromatin-remodeling and ubiquitin ligase complex genes von Le Gallo, Matthieu, O'Hara, Andrea J, Rudd, Meghan L, Urick, Mary Ellen, Hansen, Nancy F, O'Neil, Nigel J, Price, Jessica C, Zhang, Suiyuan, England, Bryant M, Godwin, Andrew K, Sgroi, Dennis C, Hieter, Philip, Mullikin, James C, Merino, Maria J, Bell, Daphne W

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