Abstract 554: Accurately identifying neoantigens utilizing both DNA and RNA somatic variants in an enhanced platform von Boyle, Sean M., Harris, Jason, Bartha, Gabor, Alla, Ravi, Karbelashvili, Mirian, Chervitz, Steve, Montana, Aldrin, Rowell, Craig, Jonganeel, Patrick, Kirk, Scott, McClory, Rena, West, John, Chen, Rich

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Abstract 3169: The benefits and burdens of assaying matched normal tissue when sequencing cancer genomes von Helman, Elena, Clark, Michael J., Alla, Ravi, Boyle, Sean M., Luo, Shujun, Virk, Selene, Church, Deanna, Sripakdeevong, Parin, Harris, Jason, karbelashvili, Mirian, Haudenschild, Christian, West, John, Chen, Richard

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Validation of an expanded neoantigen identification platform for therapeutic and diagnostic use in immuno-oncology von Boyle, Sean Michael, Harris, Jason, Bartha, Gabor, Alla, Ravi, Jongeneel, Patrick, Karbelashvili, Mirian, Kirk, Scott, Chervitz, Steve, Levy, Eric, Rowell, Craig, Thomas, Daryl, McCord, Robert, Luo, Shujun, West, John, Chen, Richard

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Abstract 3616: Fix the fixation: effect of formalin fixation on targeted sequencing, variant calling and gene expression von Alla, Ravi, Luo, Shujun, Helman, Elena, Boyle, Sean M., Clark, Michael J., Scott, Kirk, Sripakdeevong, Parin, Karbelashvili, Mirian, Church, Deanna M., Snyder, Michael, West, John, Chen, Richard

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The detection of clinically relevant cancer mutations using a high depth, augmented, comprehensive cancer gene panel von Clark, Michael James, Helman, Elena, Boyle, Sean, Luo, Shujun, Church, Deanna, Harris, Jason, Karbelashvili, Mirian, Chervitz, Stephen, Sripakdeevong, Parin, Bartha, Gabor, Patwardhan, Anil Jayant, West, John, Chen, Richard

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Abstract 1457: Genomic characterization of a PDX model of T-DM1-resistant HER2+ invasive ductal carcinoma using augmented exome sequencing von Helman, Elena, Wick, Michael J., Clark, Michael J., Gamez, Lizette, Boyle, Sean, Papadopoulos, Kyriakos P., Luo, Shujun, Tolcher, Anthony W., Sripakdeevong, Parin, Karbelashvili, Mirian, Church, Deanna, Chen, Richard, West, John

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Abstract 4744: Solving genomic assay trade-offs with an optimized, extended cancer gene panel for research and clinical applications von Clark, Michael J., Boyle, Sean M., Helman, Elena, Luo, Shujun, Bartha, Gabor, Morra, Massimo, Patwardhan, Anil, Haudenschild, Christian, Karbelashvili, Mirian, Sripakdeevong, Parin, Harris, Jason, Church, Deanna, Chervitz, Stephen, West, John, Chen, Richard

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Abstract 3899: Integrating RNA/DNA analysis with a comprehensive cancer panel to improve interpretations of stage four metastatic renal cell carcinoma von Boyle, Sean M., Clark, Michael J., Helman, Elena, Parker, Alexander S., Ho, Thai, Luo, Shujun, Kirk, Scott, Sripakdeevong, Parin, Karbelashvili, Mirian, Church, Deanna M., Snyder, Michael, West, John, Chen, Rich

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