Oncogenic H-Ras Reprograms Madin-Darby Canine Kidney (MDCK) Cell-derived Exosomal Proteins Following Epithelial-Mesenchymal Transition von Tauro, Bow J., Mathias, Rommel A., Greening, David W., Gopal, Shashi K., Ji, Hong, Kapp, Eugene A., Coleman, Bradley M., Hill, Andrew F., Kusebauch, Ulrike, Hallows, Janice L., Shteynberg, David, Moritz, Robert L., Zhu, Hong-Jian, Simpson, Richard J.

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HDX-MS study on garadacimab binding to activated FXII reveals potential binding interfaces through differential solvent exposure von Ow, Saw Yen, Kapp, Eugene A, Tomasetig, Vesna, Zalewski, Anton, Simmonds, Jason, Panousis, Con, Wilson, Michael J, Nash, Andrew D, Pelzing, Matthias

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An aspartyl protease directs malaria effector proteins to the host cell von Hodder, Anthony N, Simpson, Richard J, Crabb, Brendan S, Patsiouras, Heather, Boddey, Justin A, Cowman, Alan F, Pearce, J. Andrew, Günther, Svenja, Gilson, Paul R, de Koning-Ward, Tania F, Kapp, Eugene A

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An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis von Kapp, Eugene A., Schütz, Frédéric, Connolly, Lisa M., Chakel, John A., Meza, Jose E., Miller, Christine A., Fenyo, David, Eng, Jimmy K., Adkins, Joshua N., Omenn, Gilbert S., Simpson, Richard J.

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Aspartyl Protease 5 Matures Dense Granule Proteins That Reside at the Host-Parasite Interface in Toxoplasma gondii von Coffey, Michael J, Dagley, Laura F, Seizova, Simona, Kapp, Eugene A, Infusini, Giuseppe, Roos, David S, Boddey, Justin A, Webb, Andrew I, Tonkin, Christopher J

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Proteomics Standards Initiative Extended FASTA Format von Binz, Pierre-Alain, Shofstahl, Jim, Vizcaíno, Juan Antonio, Barsnes, Harald, Chalkley, Robert J, Menschaert, Gerben, Alpi, Emanuele, Clauser, Karl, Eng, Jimmy K, Lane, Lydie, Seymour, Sean L, Sánchez, Luis Francisco Hernández, Mayer, Gerhard, Eisenacher, Martin, Perez-Riverol, Yasset, Kapp, Eugene A, Mendoza, Luis, Baker, Peter R, Collins, Andrew, Van Den Bossche, Tim, Deutsch, Eric W

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ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC–MS/MS Experiments von Choi, Meena, Eren-Dogu, Zeynep F, Colangelo, Christopher, Cottrell, John, Hoopmann, Michael R, Kapp, Eugene A, Kim, Sangtae, Lam, Henry, Neubert, Thomas A, Palmblad, Magnus, Phinney, Brett S, Weintraub, Susan T, MacLean, Brendan, Vitek, Olga

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No evidence of enemy release in pathogen and microbial communities of common wasps (Vespula vulgaris) in their native and introduced range von Lester, Philip J, Bosch, Peter J, Gruber, Monica A M, Kapp, Eugene A, Peng, Lifeng, Brenton-Rule, Evan C, Buchanan, Joe, Stanislawek, Wlodek L, Archer, Michael, Corley, Juan C, Masciocchi, Maitè, Van Oystaeyen, Annette, Wenseleers, Tom

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Secretome-Based Proteomic Profiling of Ras-Transformed MDCK Cells Reveals Extracellular Modulators of Epithelial-Mesenchymal Transition von Mathias, Rommel A, Wang, Bo, Ji, Hong, Kapp, Eugene A, Moritz, Robert L, Zhu, Hong-Jian, Simpson, Richard J

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Triton X-114 phase separation in the isolation and purification of mouse liver microsomal membrane proteins von Mathias, Rommel A., Chen, Yuan-Shou, Kapp, Eugene A., Greening, David W., Mathivanan, Suresh, Simpson, Richard J.

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Difference gel electrophoresis analysis of Ras-transformed fibroblast cell-derived exosomes von Ji, Hong, Erfani, Nasrollah, Tauro, Bow J, Kapp, Eugene A, Zhu, Hong-Jian, Moritz, Robert L, Lim, Justin W.E, Simpson, Richard J

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A Proteome Strategy for Fractionating Proteins and Peptides Using Continuous Free-Flow Electrophoresis Coupled Off-Line to Reversed-Phase High-Performance Liquid Chromatography von Moritz, Robert L, Ji, Hong, Schütz, Frédéric, Connolly, Lisa M, Kapp, Eugene A, Speed, Terence P, Simpson, Richard J

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Structural basis for the inhibition of βFXIIa by garadacimab von Drulyte, Ieva, Ghai, Rajesh, Ow, Saw Yen, Kapp, Eugene A., Quek, Adam J., Panousis, Con, Wilson, Michael J., Nash, Andrew D., Pelzing, Matthias

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Proteomic profiling of secretome and adherent plasma membranes from distinct mammary epithelial cell subpopulations von Ji, Hong, Goode, Robert J. A., Vaillant, Francois, Mathivanan, Suresh, Kapp, Eugene A., Mathias, Rommel A., Lindeman, Geoffrey J., Visvader, Jane E., Simpson, Richard J.

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BAK core dimers bind lipids and can be bridged by them von Cowan, Angus D., Smith, Nicholas A., Sandow, Jarrod J., Kapp, Eugene A., Rustam, Yepy H., Murphy, James M., Brouwer, Jason M., Bernardini, Jonathan P., Roy, Michael J., Wardak, Ahmad Z., Tan, Iris K., Webb, Andrew I., Gulbis, Jacqueline M., Smith, Brian J., Reid, Gavin E., Dewson, Grant, Colman, Peter M., Czabotar, Peter E.

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The inner ear proteome of fish von Thomas, Oliver R. B., Swearer, Stephen E., Kapp, Eugene A., Peng, Po, Tonkin‐Hill, Gerry Q., Papenfuss, Anthony, Roberts, Anne, Bernard, Pascal, Roberts, Blaine R.

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Endocytic membrane repair by ESCRT-III controls antigen export to the cytosol during antigen cross-presentation von Gros, Marine, Segura, Elodie, Rookhuizen, Derek C., Baudon, Blandine, Heurtebise-Chrétien, Sandrine, Burgdorf, Nina, Maurin, Mathieu, Kapp, Eugene A., Simpson, Richard J., Kozik, Patrycja, Villadangos, Jose A., Bertrand, Mathieu J.M., Burbage, Marianne, Amigorena, Sebastian

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Characterization and Identification of Dityrosine Cross-Linked Peptides Using Tandem Mass Spectrometry von Mukherjee, Soumya, Kapp, Eugene A, Lothian, Amber, Roberts, Anne M, Vasil’ev, Yury V, Boughton, Berin A, Barnham, Kevin J, Kok, W. Mei, Hutton, Craig A, Masters, Colin L, Bush, Ashley I, Beckman, Joseph S, Dey, Somdatta Ghosh, Roberts, Blaine R

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Enhanced Analysis of the Mouse Plasma Proteome Using Cysteine-Containing Tryptic Glycopeptides von Bernhard, Oliver K, Kapp, Eugene A, Simpson, Richard J

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Tandem application of cationic colloidal silica and Triton X-114 for plasma membrane protein isolation and purification: Towards developing an MDCK protein database von Mathias, Rommel A., Chen, Yuan-Shou, Goode, Robert J. A., Kapp, Eugene A., Mathivanan, Suresh, Moritz, Robert L., Zhu, Hong-Jian, Simpson, Richard J.

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