Multiscale Spatial Organization of RNA Polymerase in Escherichia coli von Endesfelder, Ulrike, Finan, Kieran, Holden, Seamus J., Cook, Peter R., Kapanidis, Achillefs N., Heilemann, Mike

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Recent Advances in Understanding σ70-Dependent Transcription Initiation Mechanisms von Mazumder, Abhishek, Kapanidis, Achillefs N.

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DAOSTORM: an algorithm for high- density super-resolution microscopy von Holden, Seamus J, Uphoff, Stephan, Kapanidis, Achillefs N

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Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid von Stracy, Mathew, Lesterlin, Christian, de Leon, Federico Garza, Uphoff, Stephan, Zawadzki, Pawel, Kapanidis, Achillefs N.

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Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins von Stracy, Mathew, Schweizer, Jakob, Sherratt, David J., Kapanidis, Achillefs N., Uphoff, Stephan, Lesterlin, Christian

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RNA Polymerase Pausing during Initial Transcription von Duchi, Diego, Bauer, David L.V., Fernandez, Laurent, Evans, Geraint, Robb, Nicole, Hwang, Ling Chin, Gryte, Kristofer, Tomescu, Alexandra, Zawadzki, Pawel, Morichaud, Zakia, Brodolin, Konstantin, Kapanidis, Achillefs N.

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Single-molecule DNA repair in live bacteria von Uphoff, Stephan, Reyes-Lamothe, Rodrigo, de Leon, Federico Garza, Sherratt, David J., Kapanidis, Achillefs N.

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Long-Lived Intracellular Single-Molecule Fluorescence Using Electroporated Molecules von Crawford, Robert, Torella, Joseph P., Aigrain, Louise, Plochowietz, Anne, Gryte, Kristofer, Uphoff, Stephan, Kapanidis, Achillefs N.

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Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli von Stracy, Mathew, Jaciuk, Marcin, Uphoff, Stephan, Kapanidis, Achillefs N., Nowotny, Marcin, Sherratt, David J., Zawadzki, Pawel

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RNA polymerase clamp conformational dynamics: long-lived states and modulation by crowding, cations, and nonspecific DNA binding von Mazumder, Abhishek, Wang, Anna, Uhm, Heesoo, Ebright, Richard H, Kapanidis, Achillefs N

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The Localization and Action of Topoisomerase IV in Escherichia coli Chromosome Segregation Is Coordinated by the SMC Complex, MukBEF von Zawadzki, Pawel, Stracy, Mathew, Ginda, Katarzyna, Zawadzka, Katarzyna, Lesterlin, Christian, Kapanidis, Achillefs N., Sherratt, David J.

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High-throughput super-resolution analysis of influenza virus pleomorphism reveals insights into viral spatial organization von McMahon, Andrew, Andrews, Rebecca, Groves, Danielle, Ghani, Sohail V, Cordes, Thorben, Kapanidis, Achillefs N, Robb, Nicole C

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Identifying Molecular Dynamics in Single-Molecule FRET Experiments with Burst Variance Analysis von Torella, Joseph P., Holden, Seamus J., Santoso, Yusdi, Hohlbein, Johannes, Kapanidis, Achillefs N.

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Characterization of Dark Quencher Chromophores as Nonfluorescent Acceptors for Single-Molecule FRET von Le Reste, Ludovic, Hohlbein, Johannes, Gryte, Kristofer, Kapanidis, Achillefs N.

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Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3) von Lin, Wei, Das, Kalyan, Degen, David, Mazumder, Abhishek, Duchi, Diego, Wang, Dongye, Ebright, Yon W., Ebright, Richard Y., Sineva, Elena, Gigliotti, Matthew, Srivastava, Aashish, Mandal, Sukhendu, Jiang, Yi, Liu, Yu, Yin, Ruiheng, Zhang, Zhening, Eng, Edward T., Thomas, Dennis, Donadio, Stefano, Zhang, Haibo, Zhang, Changsheng, Kapanidis, Achillefs N., Ebright, Richard H.

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The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp von Duchi, Diego, Mazumder, Abhishek, Malinen, Anssi M, Ebright, Richard H, Kapanidis, Achillefs N

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Initial Transcription by RNA Polymerase Proceeds Through a DNA-Scrunching Mechanism von Kapanidis, Achillefs N, Margeat, Emmanuel, Ho, Sam On, Kortkhonjia, Ekaterine, Weiss, Shimon, Ebright, Richard H

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Viral detection and identification in 20 min by rapid single-particle fluorescence in-situ hybridization of viral RNA von Hepp, Christof, Shiaelis, Nicolas, Robb, Nicole C., Vaughan, Alison, Matthews, Philippa C., Stoesser, Nicole, Crook, Derrick, Kapanidis, Achillefs N.

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Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase von Craggs, Timothy D, Sustarsic, Marko, Plochowietz, Anne, Mosayebi, Majid, Kaju, Hendrik, Cuthbert, Andrew, Hohlbein, Johannes, Domicevica, Laura, Biggin, Philip C, Doye, Jonathan P K, Kapanidis, Achillefs N

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Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria von Dulin, David, Bauer, David L. V., Malinen, Anssi M., Bakermans, Jacob J. W., Kaller, Martin, Morichaud, Zakia, Petushkov, Ivan, Depken, Martin, Brodolin, Konstantin, Kulbachinskiy, Andrey, Kapanidis, Achillefs N.

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