Fast and accurate genomic analyses using genome graphs von Rakocevic, Goran, Semenyuk, Vladimir, Lee, Wan-Ping, Spencer, James, Browning, John, Johnson, Ivan J., Arsenijevic, Vladan, Nadj, Jelena, Ghose, Kaushik, Suciu, Maria C., Ji, Sun-Gou, Demir, Gülfem, Li, Lizao, Toptaş, Berke Ç., Dolgoborodov, Alexey, Pollex, Björn, Spulber, Iosif, Glotova, Irina, Kómár, Péter, Stachyra, Andrew L., Li, Yilong, Popovic, Milos, Källberg, Morten, Jain, Amit, Kural, Deniz

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Template-based protein structure modeling using the RaptorX web server von Källberg, Morten, Wang, Haipeng, Wang, Sheng, Peng, Jian, Wang, Zhiyong, Lu, Hui, Xu, Jinbo

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Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications von Chen, Xiaoyu, Schulz-Trieglaff, Ole, Shaw, Richard, Barnes, Bret, Schlesinger, Felix, Källberg, Morten, Cox, Anthony J, Kruglyak, Semyon, Saunders, Christopher T

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Strelka2: fast and accurate calling of germline and somatic variants von Kim, Sangtae, Scheffler, Konrad, Halpern, Aaron L., Bekritsky, Mitchell A., Noh, Eunho, Källberg, Morten, Chen, Xiaoyu, Kim, Yeonbin, Beyter, Doruk, Krusche, Peter, Saunders, Christopher T.

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A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree von Eberle, Michael A, Fritzilas, Epameinondas, Krusche, Peter, Källberg, Morten, Moore, Benjamin L, Bekritsky, Mitchell A, Iqbal, Zamin, Chuang, Han-Yu, Humphray, Sean J, Halpern, Aaron L, Kruglyak, Semyon, Margulies, Elliott H, McVean, Gil, Bentley, David R

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Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms von Raczy, Come, Petrovski, Roman, Saunders, Christopher T, Chorny, Ilya, Kruglyak, Semyon, Margulies, Elliott H, Chuang, Han-Yu, Källberg, Morten, Kumar, Swathi A, Liao, Arnold, Little, Kristina M, Strömberg, Michael P, Tanner, Stephen W

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An improved machine learning protocol for the identification of correct Sequest search results von Källberg, Morten, Lu, Hui

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Molecular Basis of the Potent Membrane-remodeling Activity of the Epsin 1 N-terminal Homology Domain von Yoon, Youngdae, Tong, Jiansong, Lee, Park Joo, Albanese, Alexandra, Bhardwaj, Nitin, Källberg, Morten, Digman, Michelle A., Lu, Hui, Gratton, Enrico, Shin, Yeon-Kyun, Cho, Wonhwa

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A Machine Learning Protocol for Distinguish Intra-domain Peripheral Membrane Targeting Properties using Sequence and Structure von Kallberg, Morten, Lu, Hui

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RaptorX server: A Resource for Template-Based Protein Structure Modeling von Källberg, Morten, Margaryan, Gohar, Wang, Sheng, Ma, Jianzhu, Xu, Jinbo

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Genome-Wide Identification and Functional Annotation of Dual Specificity Protein- and Lipid-Binding Modules That Modulate Protein Interactions at the Membrane von Chen, Yong, Sheng, Ren, Kallberg, Morten, Silkov, Antonina, Tun, Moe P., Bhardwaj, Nitin, Kurilova, Svetlana, Hall, Randy A., Honig, Barry, Lu, Hui, Cho, Wonhwa

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Cholesterol modulates cell signaling and protein networking by specifically interacting with PDZ domain-containing scaffold proteins von Sheng, Ren, Chen, Yong, Yung Gee, Heon, Stec, Ewa, Melowic, Heather R., Blatner, Nichole R., Tun, Moe P., Kim, Yonjung, Källberg, Morten, Fujiwara, Takahiro K., Hye Hong, Ji, Pyo Kim, Kwang, Lu, Hui, Kusumi, Akihiro, Goo Lee, Min, Cho, Wonhwa

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A structure-based protocol for learning the family-specific mechanisms of membrane-binding domains von Källberg, Morten, Bhardwaj, Nitin, Langlois, Robert, Lu, Hui

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Genome-wide Functional Annotation of Dual-Specificity Protein- and Lipid-Binding Modules that Regulate Protein Interactions von Chen, Yong, Sheng, Ren, Källberg, Morten, Silkov, Antonina, Tun, Moe P., Bhardwaj, Nitin, Kurilova, Svetlana, Hall, Randy A., Honig, Barry, Lu, Hui, Cho, Wonhwa

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Understanding Protein-DNA Interactions through Dynamics von Källberg, Morten, Langlois, Robert, Carson, Matthew, Lu, Hui

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Deciphering Protein Mechanical Stability By Comparing Different Folds von Källberg, Morten, Genchev, Georgi Z., Gürsoy, Gamze, Lu, Hui

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Mechanical Signaling on the Single Protein Level Studied Using Steered Molecular Dynamics von Genchev, Georgi Z, Källberg, Morten, Gürsoy, Gamze, Mittal, Anuradha, Dubey, Lalit, Perisic, Ognjen, Feng, Gang, Langlois, Robert, Lu, Hui

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MeTaDoR: Online Resource and Prediction Server for Membrane Targeting Peripheral Proteins von Bhardwaj, Nitin, Källberg, Morten, Cho, Wonhwa, Lu, Hui

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Supporting Data for "Strelka2: Fast and accurate variant calling for germline and somatic sequencing applications" von Kim, Sangtae, Scheffler, Konrad, L Halpern, Aaron, Bekritsky, Mitchell A, Noh, Eunho, Källberg, Morten, Chen, Xiaoyu, Kim, Yeonbin, Beyter, Doruk, Krusche, Peter, Saunders, Christopher

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Strelka2: Fast and accurate variant calling for clinical sequencing applications von Kim, Sangtae, Scheffler, Konrad, L Halpern, Aaron, Bekritsky, Mitchell A, Noh, Eunho, Källberg, Morten, Chen, Xiaoyu, Beyter, Doruk, Krusche, Peter, Saunders, Christopher

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