The Meaning of Correctional Crowding: Steps Toward an Index of Severity von Klofas, John M., Stojkovic, Stan, Kalinich, David A.

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Viral dynamics of acute SARS-CoV-2 infection and applications to diagnostic and public health strategies von Kissler, Stephen M., Fauver, Joseph R., Mack, Christina, Olesen, Scott W., Tai, Caroline, Shiue, Kristin Y., Kalinich, Chaney C., Jednak, Sarah, Ott, Isabel M., Vogels, Chantal B. F., Wohlgemuth, Jay, Weisberger, James, DiFiori, John, Anderson, Deverick J., Mancell, Jimmie, Ho, David D., Grubaugh, Nathan D., Grad, Yonatan H.

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Deregulation of ribosomal protein expression and translation promotes breast cancer metastasis von Ebright, Richard Y, Lee, Sooncheol, Wittner, Ben S, Niederhoffer, Kira L, Nicholson, Benjamin T, Bardia, Aditya, Truesdell, Samuel, Wiley, Devon F, Wesley, Benjamin, Li, Selena, Mai, Andy, Aceto, Nicola, Vincent-Jordan, Nicole, Szabolcs, Annamaria, Chirn, Brian, Kreuzer, Johannes, Comaills, Valentine, Kalinich, Mark, Haas, Wilhelm, Ting, David T, Toner, Mehmet, Vasudevan, Shobha, Haber, Daniel A, Maheswaran, Shyamala, Micalizzi, Douglas S

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An RNA-based signature enables high specificity detection of circulating tumor cells in hepatocellular carcinoma von Kalinich, Mark, Bhan, Irun, Kwan, Tanya T., Miyamoto, David T., Javaid, Sarah, LiCausi, Joseph A., Milner, John D., Hong, Xin, Goyal, Lipika, Sil, Srinjoy, Choz, Melissa, Ho, Uyen, Kapur, Ravi, Muzikansky, Alona, Zhang, Huidan, Weitz, David A., Sequist, Lecia V., Ryan, David P., Chung, Raymond T., Zhu, Andrew X., Isselbacher, Kurt J., Ting, David T., Toner, Mehmet, Maheswaran, Shyamala, Haber, Daniel A.

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Molecular signatures of circulating melanoma cells for monitoring early response to immune checkpoint therapy von Hong, Xin, Sullivan, Ryan J., Kalinich, Mark, Kwan, Tanya Todorova, Giobbie-Hurder, Anita, Pan, Shiwei, LiCausi, Joseph A., Milner, John D., Nieman, Linda T., Wittner, Ben S., Ho, Uyen, Chen, Tianqi, Kapur, Ravi, Lawrence, Donald P., Flaherty, Keith T., Sequist, Lecia V., Ramaswamy, Sridhar, Miyamoto, David T., Lawrence, Michael, Toner, Mehmet, Isselbacher, Kurt J., Maheswaran, Shyamala, Haber, Daniel A.

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SalivaDirect: A simplified and flexible platform to enhance SARS-CoV-2 testing capacity von Vogels, Chantal B.F., Watkins, Anne E., Harden, Christina A., Brackney, Doug E., Shafer, Jared, Wang, Jianhui, Caraballo, César, Kalinich, Chaney C., Ott, Isabel M., Fauver, Joseph R., Kudo, Eriko, Lu, Peiwen, Venkataraman, Arvind, Tokuyama, Maria, Moore, Adam J., Muenker, M. Catherine, Casanovas-Massana, Arnau, Fournier, John, Bermejo, Santos, Campbell, Melissa, Datta, Rupak, Nelson, Allison, Anastasio, Kelly, Askenase, Michael H., Batsu, Maria, Bickerton, Sean, Brower, Kristina, Bucklin, Molly L., Cahill, Staci, Cao, Yiyun, Courchaine, Edward, DeIuliis, Giuseppe, Earnest, Rebecca, Geng, Bertie, Goldman-Israelow, Benjamin, Handoko, Ryan, Khoury-Hanold, William, Kim, Daniel, Knaggs, Lynda, Kuang, Maxine, Lapidus, Sarah, Lim, Joseph, Linehan, Melissa, Lu-Culligan, Alice, Martin, Anjelica, Matos, Irene, McDonald, David, Minasyan, Maksym, Nakahata, Maura, Naushad, Nida, Nouws, Jessica, Obaid, Abeer, Odio, Camila, Oh, Ji Eun, Omer, Saad, Park, Annsea, Park, Hong-Jai, Peng, Xiaohua, Petrone, Mary, Prophet, Sarah, Rice, Tyler, Rose, Kadi-Ann, Sewanan, Lorenzo, Sharma, Lokesh, Shaw, Albert C., Shepard, Denise, Smolgovsky, Mikhail, Sonnert, Nicole, Strong, Yvette, Todeasa, Codruta, Valdez, Jordan, Velazquez, Sofia, Vijayakumar, Pavithra, White, Elizabeth B., Yang, Yexin, Dela Cruz, Charles S., Ko, Albert I., Iwasaki, Akiko, Krumholz, Harlan M., Matheus, J.D., Hui, Pei, Liu, Chen, Farhadian, Shelli F., Sikka, Robby, Wyllie, Anne L., Grubaugh, Nathan D.

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Impact of circulating SARS-CoV-2 variants on mRNA vaccine-induced immunity von Lucas, Carolina, Vogels, Chantal B. F., Yildirim, Inci, Rothman, Jessica E., Lu, Peiwen, Monteiro, Valter, Gehlhausen, Jeff R., Campbell, Melissa, Silva, Julio, Tabachnikova, Alexandra, Peña-Hernandez, Mario A., Muenker, M. Catherine, Breban, Mallery I., Fauver, Joseph R., Mohanty, Subhasis, Huang, Jiefang, Shaw, Albert C., Ko, Albert I., Omer, Saad B., Grubaugh, Nathan D., Iwasaki, Akiko

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A Digital RNA Signature of Circulating Tumor Cells Predicting Early Therapeutic Response in Localized and Metastatic Breast Cancer von Kwan, Tanya T, Bardia, Aditya, Spring, Laura M, Giobbie-Hurder, Anita, Kalinich, Mark, Dubash, Taronish, Sundaresan, Tilak, Hong, Xin, LiCausi, Joseph A, Ho, Uyen, Silva, Erin J, Wittner, Ben S, Sequist, Lecia V, Kapur, Ravi, Miyamoto, David T, Toner, Mehmet, Haber, Daniel A, Maheswaran, Shyamala

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Delivery of Small Interfering RNA by Peptide-Targeted Mesoporous Silica Nanoparticle-Supported Lipid Bilayers von Ashley, Carlee E, Carnes, Eric C, Epler, Katharine E, Padilla, David P, Phillips, Genevieve K, Castillo, Robert E, Wilkinson, Dan C, Wilkinson, Brian S, Burgard, Cameron A, Kalinich, Robin M, Townson, Jason L, Chackerian, Bryce, Willman, Cheryl L, Peabody, David S, Wharton, Walker, Brinker, C. Jeffrey

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Longitudinal analyses reveal immunological misfiring in severe COVID-19 von Lucas, Carolina, Wong, Patrick, Klein, Jon, Castro, Tiago B. R., Silva, Julio, Sundaram, Maria, Ellingson, Mallory K., Mao, Tianyang, Oh, Ji Eun, Israelow, Benjamin, Takahashi, Takehiro, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Mohanty, Subhasis, Wang, Haowei, Wyllie, Anne L., Vogels, Chantal B. F., Earnest, Rebecca, Lapidus, Sarah, Ott, Isabel M., Moore, Adam J., Muenker, M. Catherine, Fournier, John B., Campbell, Melissa, Odio, Camila D., Casanovas-Massana, Arnau, Herbst, Roy, Shaw, Albert C., Medzhitov, Ruslan, Schulz, Wade L., Grubaugh, Nathan D., Dela Cruz, Charles, Farhadian, Shelli, Ko, Albert I., Omer, Saad B., Iwasaki, Akiko

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Sex differences in immune responses that underlie COVID-19 disease outcomes von Takahashi, Takehiro, Ellingson, Mallory K., Wong, Patrick, Israelow, Benjamin, Lucas, Carolina, Klein, Jon, Silva, Julio, Mao, Tianyang, Oh, Ji Eun, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Liu, Feimei, Meir, Amit, Sun, Jonathan, Wang, Eric Y., Casanovas-Massana, Arnau, Wyllie, Anne L., Vogels, Chantal B. F., Earnest, Rebecca, Lapidus, Sarah, Ott, Isabel M., Moore, Adam J., Shaw, Albert, Fournier, John B., Odio, Camila D., Farhadian, Shelli, Dela Cruz, Charles, Grubaugh, Nathan D., Schulz, Wade L., Ring, Aaron M., Ko, Albert I., Omer, Saad B., Iwasaki, Akiko

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Embedded Weapons-Grade Tungsten Alloy Shrapnel Rapidly Induces Metastatic High-Grade Rhabdomyosarcomas in F344 Rats von Kalinich, John F., Emond, Christy A., Dalton, Thomas K., Mog, Steven R., Coleman, Gary D., Kordell, Jessica E., Miller, Alexandra C., McClain, David E.

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Diverse functional autoantibodies in patients with COVID-19 von Wang, Eric Y., Mao, Tianyang, Klein, Jon, Dai, Yile, Huck, John D., Jaycox, Jillian R., Liu, Feimei, Zhou, Ting, Israelow, Benjamin, Wong, Patrick, Coppi, Andreas, Lucas, Carolina, Silva, Julio, Oh, Ji Eun, Song, Eric, Perotti, Emily S., Zheng, Neil S., Fischer, Suzanne, Campbell, Melissa, Fournier, John B., Wyllie, Anne L., Vogels, Chantal B. F., Ott, Isabel M., Kalinich, Chaney C., Petrone, Mary E., Watkins, Anne E., Dela Cruz, Charles, Farhadian, Shelli F., Schulz, Wade L., Ma, Shuangge, Grubaugh, Nathan D., Ko, Albert I., Iwasaki, Akiko, Ring, Aaron M.

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Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques von Baaijens, Jasmijn A, Zulli, Alessandro, Ott, Isabel M, Nika, Ioanna, van der Lugt, Mart J, Petrone, Mary E, Alpert, Tara, Fauver, Joseph R, Kalinich, Chaney C, Vogels, Chantal B F, Breban, Mallery I, Duvallet, Claire, McElroy, Kyle A, Ghaeli, Newsha, Imakaev, Maxim, Mckenzie-Bennett, Malaika F, Robison, Keith, Plocik, Alex, Schilling, Rebecca, Pierson, Martha, Littlefield, Rebecca, Spencer, Michelle L, Simen, Birgitte B, Hanage, William P, Grubaugh, Nathan D, Peccia, Jordan, Baym, Michael

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Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA von Earnest, Rebecca, Uddin, Rockib, Matluk, Nicholas, Renzette, Nicholas, Turbett, Sarah E., Siddle, Katherine J., Loreth, Christine, Adams, Gordon, Tomkins-Tinch, Christopher H., Petrone, Mary E., Rothman, Jessica E., Breban, Mallery I., Koch, Robert Tobias, Billig, Kendall, Fauver, Joseph R., Vogels, Chantal B.F., Bilguvar, Kaya, De Kumar, Bony, Landry, Marie L., Peaper, David R., Omerza, Greg, Grieser, Heather, Meak, Sim, Martha, John, Dewey, Hannah B., King, Ewa, Huard, Richard C., Novitsky, Vlad, Darpolor, Josephine, Manne, Akarsh, Kantor, Rami, Smole, Sandra C., Brown, Catherine M., Fink, Timelia, Lang, Andrew S., Gallagher, Glen R., Pitzer, Virginia E., Sabeti, Pardis C., Gabriel, Stacey, MacInnis, Bronwyn L., Altajar, Ahmad, DeJesus, Alexandra, Brito, Anderson, Watkins, Anne E., Muyombwe, Anthony, Blumenstiel, Brendan S., Neal, Caleb, Kalinich, Chaney C., Liu, Chen, Castaldi, Christopher, Pearson, Claire, Bernard, Clare, Nolet, Corey M., Buzby, Erika, Laszlo, Eva, Reagan, Faye L., Vicente, Gina, Rooke, Heather M., Munger, Heidi, Johnson, Hillary, Tikhonova, Irina R., Ott, Isabel M., Razeq, Jafar, Meldrim, James C., Brown, Jessica, Wang, Jianhui, Vostok, Johanna, Beauchamp, John P., Grimsby, Jonna L., Messer, Katelyn S., Vernest, Kyle, Green, Lisa M., Webber, Lori, Gagne, Luc, Ray, Marianne C., Fisher, Marissa E., Barter, Mary, Lee, Matthew D., DeFelice, Matthew T., Cipicchio, Michelle C., Smith, Natasha L., Fitzgerald, Nicholas A., Kerantzas, Nicholas, Hui, Pei, Harrington, Rachel, Haye, Rashida, Lynch, Ryan, Cofsky, Seana, Clancy, Selina, Mane, Shrikant, Ash, Stephanie, Baez, Stephanie, Fleming, Steve, Murphy, Steven, Alpert, Tara, Mandese, Zoe M., Adams, Mark D., Park, Daniel J., Lemieux, Jacob E., Grubaugh, Nathan D.

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Delayed production of neutralizing antibodies correlates with fatal COVID-19 von Lucas, Carolina, Klein, Jon, Sundaram, Maria E., Liu, Feimei, Wong, Patrick, Silva, Julio, Mao, Tianyang, Oh, Ji Eun, Mohanty, Subhasis, Huang, Jiefang, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Israelow, Benjamin, Vogels, Chantal B. F., Muenker, M. Catherine, Chang, C-Hong, Casanovas-Massana, Arnau, Moore, Adam J., Zell, Joseph, Fournier, John B., Wyllie, Anne L., Campbell, Melissa, Lee, Alfred I., Chun, Hyung J., Grubaugh, Nathan D., Schulz, Wade L., Farhadian, Shelli, Dela Cruz, Charles, Ring, Aaron M., Shaw, Albert C., Wisnewski, Adam V., Yildirim, Inci, Ko, Albert I., Omer, Saad B., Iwasaki, Akiko

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Global disparities in SARS-CoV-2 genomic surveillance von Brito, Anderson F., Semenova, Elizaveta, Dudas, Gytis, Hassler, Gabriel W., Kalinich, Chaney C., Kraemer, Moritz U. G., Ho, Joses, Tegally, Houriiyah, Githinji, George, Agoti, Charles N., Matkin, Lucy E., Whittaker, Charles, Howden, Benjamin P., Sintchenko, Vitali, Zuckerman, Neta S., Mor, Orna, Blankenship, Heather M., de Oliveira, Tulio, Lin, Raymond T. P., Siqueira, Marilda Mendonça, Resende, Paola Cristina, Vasconcelos, Ana Tereza R., Spilki, Fernando R., Aguiar, Renato Santana, Alexiev, Ivailo, Ivanov, Ivan N., Philipova, Ivva, Carrington, Christine V. F., Sahadeo, Nikita S. D., Branda, Ben, Gurry, Céline, Maurer-Stroh, Sebastian, Naidoo, Dhamari, von Eije, Karin J., Perkins, Mark D., van Kerkhove, Maria, Hill, Sarah C., Sabino, Ester C., Pybus, Oliver G., Dye, Christopher, Bhatt, Samir, Flaxman, Seth, Suchard, Marc A., Grubaugh, Nathan D., Baele, Guy, Faria, Nuno R.

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Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons von Chaguza, Chrispin, Coppi, Andreas, Earnest, Rebecca, Ferguson, David, Kerantzas, Nicholas, Warner, Frederick, Young, H. Patrick, Breban, Mallery I., Billig, Kendall, Koch, Robert Tobias, Pham, Kien, Kalinich, Chaney C., Ott, Isabel M., Fauver, Joseph R., Hahn, Anne M., Tikhonova, Irina R., Castaldi, Christopher, De Kumar, Bony, Pettker, Christian M., Warren, Joshua L., Weinberger, Daniel M., Landry, Marie L., Peaper, David R., Schulz, Wade, Vogels, Chantal B.F., Grubaugh, Nathan D.

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Gut microbiome dysbiosis in antibiotic-treated COVID-19 patients is associated with microbial translocation and bacteremia von Bernard-Raichon, Lucie, Venzon, Mericien, Klein, Jon, Axelrad, Jordan E., Zhang, Chenzhen, Sullivan, Alexis P., Hussey, Grant A., Casanovas-Massana, Arnau, Noval, Maria G., Valero-Jimenez, Ana M., Gago, Juan, Putzel, Gregory, Pironti, Alejandro, Wilder, Evan, Thorpe, Lorna E., Littman, Dan R., Dittmann, Meike, Stapleford, Kenneth A., Shopsin, Bo, Torres, Victor J., Ko, Albert I., Iwasaki, Akiko, Cadwell, Ken, Schluter, Jonas

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An RNA-Based Digital Circulating Tumor Cell Signature Is Predictive of Drug Response and Early Dissemination in Prostate Cancer von Miyamoto, David T, Lee, Richard J, Kalinich, Mark, LiCausi, Joseph A, Zheng, Yu, Chen, Tianqi, Milner, John D, Emmons, Erin, Ho, Uyen, Broderick, Katherine, Silva, Erin, Javaid, Sarah, Kwan, Tanya Todorova, Hong, Xin, Dahl, Douglas M, McGovern, Francis J, Efstathiou, Jason A, Smith, Matthew R, Sequist, Lecia V, Kapur, Ravi, Wu, Chin-Lee, Stott, Shannon L, Ting, David T, Giobbie-Hurder, Anita, Toner, Mehmet, Maheswaran, Shyamala, Haber, Daniel A

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