Emerging Roles of Non-Coding RNA Transcription von Kaikkonen, Minna U., Adelman, Karen

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Remodeling of the Enhancer Landscape during Macrophage Activation Is Coupled to Enhancer Transcription von Kaikkonen, Minna U., Spann, Nathanael J., Heinz, Sven, Romanoski, Casey E., Allison, Karmel A., Stender, Joshua D., Chun, Hyun B., Tough, David F., Prinjha, Rab K., Benner, Christopher, Glass, Christopher K.

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Control of Proinflammatory Gene Programs by Regulated Trimethylation and Demethylation of Histone H4K20 von Stender, Joshua D., Pascual, Gabriel, Liu, Wen, Kaikkonen, Minna U., Do, Kevin, Spann, Nathanael J., Boutros, Michael, Perrimon, Norbert, Rosenfeld, Michael G., Glass, Christopher K.

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NCoR Repression of LXRs Restricts Macrophage Biosynthesis of Insulin-Sensitizing Omega 3 Fatty Acids von Li, Pingping, Spann, Nathanael J., Kaikkonen, Minna U., Lu, Min, Oh, Da Young, Fox, Jesse N., Bandyopadhyay, Gautam, Talukdar, Saswata, Xu, Jianfeng, Lagakos, William S., Patsouris, David, Armando, Aaron, Quehenberger, Oswald, Dennis, Edward A., Watkins, Steven M., Auwerx, Johan, Glass, Christopher K., Olefsky, Jerrold M.

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SREBP1 Contributes to Resolution of Pro-inflammatory TLR4 Signaling by Reprogramming Fatty Acid Metabolism von Oishi, Yumiko, Spann, Nathanael J., Link, Verena M., Muse, Evan D., Strid, Tobias, Edillor, Chantle, Kolar, Matthew J., Matsuzaka, Takashi, Hayakawa, Sumio, Tao, Jenhan, Kaikkonen, Minna U., Carlin, Aaron F., Lam, Michael T., Manabe, Ichiro, Shimano, Hitoshi, Saghatelian, Alan, Glass, Christopher K.

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Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA von Wang, Dong, Garcia-Bassets, Ivan, Benner, Chris, Li, Wenbo, Su, Xue, Zhou, Yiming, Qiu, Jinsong, Liu, Wen, Kaikkonen, Minna U., Ohgi, Kenneth A., Glass, Christopher K., Rosenfeld, Michael G., Fu, Xiang-Dong

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Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation von Cuartero, Sergi, Weiss, Felix D., Dharmalingam, Gopuraja, Guo, Ya, Ing-Simmons, Elizabeth, Masella, Silvia, Robles-Rebollo, Irene, Xiao, Xiaolin, Wang, Yi-Fang, Barozzi, Iros, Djeghloul, Dounia, Amano, Mariane T., Niskanen, Henri, Petretto, Enrico, Dowell, Robin D., Tachibana, Kikuë, Kaikkonen, Minna U., Nasmyth, Kim A., Lenhard, Boris, Natoli, Gioacchino, Fisher, Amanda G., Merkenschlager, Matthias

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Characterization of a functional endothelial super-enhancer that regulates ADAMTS18 and angiogenesis von Mushimiyimana, Isidore, Niskanen, Henri, Beter, Mustafa, Laakkonen, Johanna P, Kaikkonen, Minna U, Ylä-Herttuala, Seppo, Laham-Karam, Nihay

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NRF2 is a key regulator of endothelial microRNA expression under proatherogenic stimuli von Linna-Kuosmanen, Suvi, Tomas Bosch, Vanesa, Moreau, Pierre R, Bouvy-Liivrand, Maria, Niskanen, Henri, Kansanen, Emilia, Kivelä, Annukka, Hartikainen, Juha, Hippeläinen, Mikko, Kokki, Hannu, Tavi, Pasi, Levonen, Anna-Liisa, Kaikkonen, Minna U

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Quantification of nascent transcription by bromouridine immunocapture nuclear run-on RT-qPCR von Roberts, Thomas C, Hart, Jonathan R, Kaikkonen, Minna U, Weinberg, Marc S, Vogt, Peter K, Morris, Kevin V

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Mechanisms establishing TLR4-responsive activation states of inflammatory response genes von Escoubet-Lozach, Laure, Benner, Christopher, Kaikkonen, Minna U, Lozach, Jean, Heinz, Sven, Spann, Nathan J, Crotti, Andrea, Stender, Josh, Ghisletti, Serena, Reichart, Donna, Cheng, Christine S, Luna, Rosa, Ludka, Colleen, Sasik, Roman, Garcia-Bassets, Ivan, Hoffmann, Alexander, Subramaniam, Shankar, Hardiman, Gary, Rosenfeld, Michael G, Glass, Christopher K

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Transcription factor Nr4a1 couples sympathetic and inflammatory cues in CNS-recruited macrophages to limit neuroinflammation von Shaked, Iftach, Hanna, Richard N, Shaked, Helena, Chodaczek, Grzegorz, Nowyhed, Heba N, Tweet, George, Tacke, Robert, Basat, Alp Bugra, Mikulski, Zbigniew, Togher, Susan, Miller, Jacqueline, Blatchley, Amy, Salek-Ardakani, Shahram, Darvas, Martin, Kaikkonen, Minna U, Thomas, Graham D, Lai-Wing-Sun, Sonia, Rezk, Ayman, Bar-Or, Amit, Glass, Christopher K, Bandukwala, Hozefa, Hedrick, Catherine C

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Genetic variation drives differences in obesity-related gene regulation von Kaikkonen, Minna U.

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Nuclear microRNA-466c regulates Vegfa expression in response to hypoxia von Laitinen, Pia, Väänänen, Mari-Anna, Kolari, Ida-Liisa, Mäkinen, Petri I, Kaikkonen, Minna U, Weinberg, Marc S, Morris, Kevin V, Korhonen, Paula, Malm, Tarja, Ylä-Herttuala, Seppo, Roberts, Thomas C, Turunen, Mikko P, Turunen, Tiia A

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Pharmacological or TRIB3-Mediated Suppression of ATF4 Transcriptional Activity Promotes Hepatoma Cell Resistance to Proteasome Inhibitor Bortezomib von Ord, Tiit, Ord, Daima, Kaikkonen, Minna U., Ord, Tonis

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Progression of herpesvirus infection remodels mitochondrial organization and metabolism von Leclerc, Simon, Gupta, Alka, Ruokolainen, Visa, Chen, Jian-Hua, Kunnas, Kari, Ekman, Axel A, Niskanen, Henri, Belevich, Ilya, Vihinen, Helena, Turkki, Paula, Perez-Berna, Ana J, Kapishnikov, Sergey, Mäntylä, Elina, Harkiolaki, Maria, Dufour, Eric, Hytönen, Vesa, Pereiro, Eva, McEnroe, Tony, Fahy, Kenneth, Kaikkonen, Minna U, Jokitalo, Eija, Larabell, Carolyn A, Weinhardt, Venera, Mattola, Salla, Aho, Vesa, Vihinen-Ranta, Maija

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MicroRNAs mediate the senescence-associated decline of NRF2 in endothelial cells von Kuosmanen, Suvi M., Sihvola, Virve, Kansanen, Emilia, Kaikkonen, Minna U., Levonen, Anna-Liisa

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Deletion of Lymphangiogenic and Angiogenic Growth Factor VEGF-D Leads to Severe Hyperlipidemia and Delayed Clearance of Chylomicron Remnants von Tirronen, Annakaisa, Vuorio, Taina, Kettunen, Sanna, Hokkanen, Krista, Ramms, Bastian, Niskanen, Henri, Laakso, Hanne, Kaikkonen, Minna U, Jauhiainen, Matti, Gordts, Philip L.S.M, Ylä-Herttuala, Seppo

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Genetics instability of wtAAV2 genome and AAV promoter activities in the Baculovirus/Sf9 cells system von Savy, Adrien, Kaikkonen, Minna U, Léger, Adrien, Dickx, Yohann, Galibert, Lionel, Merten, Otto-Wilhelm

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Global analysis of transcription in castration-resistant prostate cancer cells uncovers active enhancers and direct androgen receptor targets von Toropainen, Sari, Niskanen, Einari A., Malinen, Marjo, Sutinen, Päivi, Kaikkonen, Minna U., Palvimo, Jorma J.

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