RESCRIPt: Reproducible sequence taxonomy reference database management von Robeson, Michael S., O'Rourke, Devon R., Kaehler, Benjamin D., Ziemski, Michal, Dillon, Matthew R., Foster, Jeffrey T., Bokulich, Nicholas A.

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Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin von Bokulich, Nicholas A, Kaehler, Benjamin D, Rideout, Jai Ram, Dillon, Matthew, Bolyen, Evan, Knight, Rob, Huttley, Gavin A, Gregory Caporaso, J

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Species abundance information improves sequence taxonomy classification accuracy von Kaehler, Benjamin D., Bokulich, Nicholas A., McDonald, Daniel, Knight, Rob, Caporaso, J. Gregory, Huttley, Gavin A.

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Beating Naive Bayes at Taxonomic Classification of 16S rRNA Gene Sequences von Ziemski, Michal, Wisanwanichthan, Treepop, Bokulich, Nicholas A., Kaehler, Benjamin D.

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Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods von Bokulich, Nicholas A., Ziemski, Michal, Robeson, Michael S., Kaehler, Benjamin D.

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Did aculeate silk evolve as an antifouling material? von Sutherland, Tara D, Sriskantha, Alagacone, Rapson, Trevor D, Kaehler, Benjamin D, Huttley, Gavin A

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Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops von Dillon, Matthew R., Bolyen, Evan, Adamov, Anja, Belk, Aeriel, Borsom, Emily, Burcham, Zachary, Debelius, Justine W., Deel, Heather, Emmons, Alex, Estaki, Mehrbod, Herman, Chloe, Keefe, Christopher R., Morton, Jamie T., Oliveira, Renato R. M., Sanchez, Andrew, Simard, Anthony, Vazquez-Baeza, Yoshiki, Ziemski, Michal, Miwa, Hazuki E., Kerere, Terry A., Coote, Carline, Bonneau, Richard, Knight, Rob, Oliveira, Guilherme, Gopalasingam, Piraveen, Kaehler, Benjamin D., Cope, Emily K., Metcalf, Jessica L., Robeson, Michael S., Bokulich, Nicholas A., Caporaso, J. Gregory

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Full reconstruction of non-stationary strand-symmetric models on rooted phylogenies von Kaehler, Benjamin D.

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Genetic Distance for a General Non-Stationary Markov Substitution Process von Kaehler, Benjamin D., Von Bing Yap, Zhang, Rongli, Huttley, Gavin A.

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q2-sample-classifier: machine-learning tools for microbiome classification and regression von Bokulich, Nicholas A, Dillon, Matthew R, Bolyen, Evan, Kaehler, Benjamin D, Huttley, Gavin A, Caporaso, J Gregory

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Standard Codon Substitution Models Overestimate Purifying Selection for Nonstationary Data von Kaehler, Benjamin D., Yap, Von Bing, Huttley, Gavin A.

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Folding behavior of four silks of giant honey bee reflects the evolutionary conservation of aculeate silk proteins von Maitip, Jakkrawut, Trueman, Holly E., Kaehler, Benjamin D., Huttley, Gavin A., Chantawannakul, Panuwan, Sutherland, Tara D.

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RESCRIPt: Reproducible sequence taxonomy reference database management von Michael S. Robeson, Devon R. O’Rourke, Benjamin D. Kaehler, Michal Ziemski, Matthew R. Dillon, Jeffrey T. Foster, Nicholas A. Bokulich

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Standard Codon Substitution Models Overestimate Purifying Selection for Non-Stationary Data von Kaehler, Benjamin D., Bing Yap, Von, Huttley, Gavin A.

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Silva 138.1 taxonomy classifiers for use with QIIME 2 q2-feature-classifier von Kaehler, Benjamin D

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Dataset for the paper "Network-Based Differential Abundance Analysis: Bridging Community Interactions and Host-Microbiome Dynamics." von Hossine, Zakir, Towers, Isaac, D Kaehler, Benjamin

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Full Reconstruction of Non-Stationary Strand-Symmetric Models on Rooted Phylogenies von Kaehler, Benjamin D

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Full Reconstruction of Non-Stationary Strand-Symmetric Models on Rooted Phylogenies von Kaehler, Benjamin D

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Species abundance information improves sequence taxonomy classification accuracy - HMP and NCBI data von Kaehler, Benjamin D, Bokulich, Nicholas A

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Species abundance information improves sequence taxonomy classification accuracy - Qiita data von Kaehler, Benjamin D, Bokulich, Nicholas A

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