MicroRNAs and potential target interactions in psoriasis von Zibert, John R, Løvendorf, Marianne B, Litman, Thomas, Olsen, Jørgen, Kaczkowski, Bogumil, Skov, Lone

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A statistical simulation model to guide the choices of analytical methods in arrayed CRISPR screen experiments von Kim, Chang Sik, Cairns, Jonathan, Quarantotti, Valentina, Kaczkowski, Bogumil, Wang, Yinhai, Konings, Peter, Zhang, Xiang

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Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers von Kaczkowski, Bogumil, Tanaka, Yuji, Kawaji, Hideya, Sandelin, Albin, Andersson, Robin, Itoh, Masayoshi, Lassmann, Timo, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R R

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Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages von Roy, Sugata, Schmeier, Sebastian, Kaczkowski, Bogumil, Arner, Erik, Alam, Tanvir, Ozturk, Mumin, Tamgue, Ousman, Parihar, Suraj P., Kawaji, Hideya, Itoh, Masayoshi, Lassmann, Timo, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Guler, Reto, Bajic, Vladimir B., Brombacher, Frank, Suzuki, Harukazu

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The Rectal Cancer microRNAome ― microRNA Expression in Rectal Cancer and Matched Normal Mucosa von GAEDCKE, Jochen, GRADE, Marian, BEISSBARTH, Tim, RIED, Thomas, LITMAN, Thomas, CAMPS, Jordi, SØKILDE, Rolf, KACZKOWSKI, Bogumil, SCHETTER, Aaron J, DIFILIPPANTONIO, Michael J, HARRIS, Curtis C, MICHAEL GHADIMI, B, MØLLER, Soren

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Integrative CAGE and DNA Methylation Profiling Identify Epigenetically Regulated Genes in NSCLC von Horie, Masafumi, Kaczkowski, Bogumil, Ohshima, Mitsuhiro, Matsuzaki, Hirotaka, Noguchi, Satoshi, Mikami, Yu, Lizio, Marina, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R R, Takai, Daiya, Yamaguchi, Yoko, Micke, Patrick, Saito, Akira, Nagase, Takahide

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Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties von Das, Nando D, Chang, Jen-Chien, Hon, Chung-Chau, Kelly, S. Thomas, Ito, Shinsuke, Lizio, Marina, Kaczkowski, Bogumil, Watanabe, Hisami, Katsushima, Keisuke, Natsume, Atsushi, Koseki, Haruhiko, Kondo, Yutaka, Minoda, Aki, Umehara, Takashi

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Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection von Roy, Sugata, Guler, Reto, Parihar, Suraj P, Schmeier, Sebastian, Kaczkowski, Bogumil, Nishimura, Hajime, Shin, Jay W, Negishi, Yutaka, Ozturk, Mumin, Hurdayal, Ramona, Kubosaki, Atsutaka, Kimura, Yasumasa, de Hoon, Michiel J L, Hayashizaki, Yoshihide, Brombacher, Frank, Suzuki, Harukazu

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HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis von Bagger, Frederik Otzen, Rapin, Nicolas, Theilgaard-Mönch, Kim, Kaczkowski, Bogumil, Thoren, Lina A, Jendholm, Johan, Winther, Ole, Porse, Bo T

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CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors von Hashimoto, Kosuke, Suzuki, Ana Maria, Dos Santos, Alexandre, Desterke, Christophe, Collino, Agnese, Ghisletti, Serena, Braun, Emilie, Bonetti, Alessandro, Fort, Alexandre, Qin, Xian-Yang, Radaelli, Enrico, Kaczkowski, Bogumil, Forrest, Alistair R R, Kojima, Soichi, Samuel, Didier, Natoli, Gioacchino, Buendia, Marie Annick, Faivre, Jamila, Carninci, Piero

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Molecular profiling of high-level athlete skeletal muscle after acute endurance or resistance exercise - A systems biology approach von Reitzner, Stefan M, Emanuelsson, Eric B, Arif, Muhammad, Kaczkowski, Bogumil, Kwon, Andrew Tj, Mardinoglu, Adil, Arner, Erik, Chapman, Mark A, Sundberg, Carl Johan

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JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states von Handoko, Lusy, Kaczkowski, Bogumil, Hon, Chung-Chau, Lizio, Marina, Wakamori, Masatoshi, Matsuda, Takayoshi, Ito, Takuhiro, Jeyamohan, Prashanti, Sato, Yuko, Sakamoto, Kensaku, Yokoyama, Shigeyuki, Kimura, Hiroshi, Minoda, Aki, Umehara, Takashi

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Inhibition of BCL2A1 by STAT5 inactivation overcomes resistance to targeted therapies of FLT3-ITD/D835 mutant AML von Yamatani, Kotoko, Ai, Tomohiko, Saito, Kaori, Suzuki, Koya, Hori, Atsushi, Kinjo, Sonoko, Ikeo, Kazuho, Ruvolo, Vivian, Zhang, Weiguo, Mak, Po Yee, Kaczkowski, Bogumil, Harada, Hironori, Katayama, Kazuhiro, Sugimoto, Yoshikazu, Myslinski, Jered, Hato, Takashi, Miida, Takashi, Konopleva, Marina, Hayashizaki, Yoshihide, Carter, Bing Z., Tabe, Yoko, Andreeff, Michael

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MicroRNA expression profiling of the porcine developing brain von Podolska, Agnieszka, Kaczkowski, Bogumil, Kamp Busk, Peter, Søkilde, Rolf, Litman, Thomas, Fredholm, Merete, Cirera, Susanna

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Abstract 2897: Recurrent transcriptome alterations across multiple cancer types von Kaczkowski, Bogumil, Tanaka, Yuji, Kawaji, Hideya, Sandelin, Albin, Andersson, Robin, Itoh, Masayoshi, Lassmann, Timo, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R.R.

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xcore: an R package for inference of gene expression regulators von Migdał, Maciej, Arakawa, Takahiro, Takizawa, Satoshi, Furuno, Masaaki, Suzuki, Harukazu, Arner, Erik, Winata, Cecilia Lanny, Kaczkowski, Bogumił

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HemaExplorer: a Web server for easy and fast visualization of gene expression in normal and malignant hematopoiesis von Bagger, Frederik Otzen, Rapin, Nicolas, Theilgaard-Mönch, Kim, Kaczkowski, Bogumil, Jendholm, Johan, Winther, Ole, Porse, Bo

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Structural profiles of human miRNA families from pairwise clustering von Kaczkowski, Bogumił, Torarinsson, Elfar, Reiche, Kristin, Havgaard, Jakob Hull, Stadler, Peter F., Gorodkin, Jan

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Functional annotation of human long noncoding RNAs via molecular phenotyping von Ramilowski, Jordan A., Yip, Chi Wai, Agrawal, Saumya, Chang, Jen-Chien, Ciani, Yari, Kulakovskiy, Ivan V., Mendez, Mickael, Ooi, Jasmine Li Ching, Ouyang, John F., Parkinson, Nick, Petri, Andreas, Roos, Leonie, Severin, Jessica, Yasuzawa, Kayoko, Abugessaisa, Imad, Akalin, Altuna, Antonov, Ivan V., Arner, Erik, Bonetti, Alessandro, Bono, Hidemasa, Borsari, Beatrice, Brombacher, Frank, Cameron, Chris J. F., Cannistraci, Carlo Vittorio, Cardenas, Ryan, Cardon, Melissa, Chang, Howard, Dostie, Josee, Ducoli, Luca, Favorov, Alexander, Fort, Alexandre, Garrido, Diego, Gil, Noa, Gimenez, Juliette, Guler, Reto, Handoko, Lusy, Harshbarger, Jayson, Hasegawa, Akira, Hasegawa, Yuki, Hashimoto, Kosuke, Hayatsu, Norihito, Heutink, Peter, Hirose, Tetsuro, Imada, Eddie L., Itoh, Masayoshi, Kaczkowski, Bogumil, Kanhere, Aditi, Kawabata, Emily, Kawaji, Hideya, Kawashima, Tsugumi, Kelly, S. Thomas, Kojima, Miki, Kondo, Naoto, Koseki, Haruhiko, Kouno, Tsukasa, Kratz, Anton, Kurowska-Stolarska, Mariola, Kwon, Andrew Tae Jun, Leek, Jeffrey, Lennartsson, Andreas, Lizio, Marina, Lopez-Redondo, Fernando, Luginbuhl, Joachim, Maeda, Shiori, Makeev, Vsevolod J., Marchionni, Luigi, Medvedeva, Yulia A., Minoda, Aki, Mueller, Ferenc, Munoz-Aguirre, Manuel, Murata, Mitsuyoshi, Nishiyori, Hiromi, Nitta, Kazuhiro R., Noguchi, Shuhei, Noro, Yukihiko, Nurtdinov, Ramil, Okazaki, Yasushi, Orlando, Valerio, Paquette, Denis, Parr, Callum J. C., Rackham, Owen J. L., Rizzu, Patrizia, Martinez, Diego Fernando Sanchez, Sandelin, Albin, Sanjana, Pillay, Semple, Colin A. M., Shibayama, Youtaro, Sivaraman, Divya M., Suzuki, Takahiro, Szumowski, Suzannah C., Tagami, Michihira, Taylor, Martin S., Terao, Chikashi, Thodberg, Malte, Thongjuea, Supat, Tripathi, Vidisha, Ulitsky, Igor, Verardo, Roberto, Vorontsov, Ilya E., Yamamoto, Chinatsu

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A promoter-level mammalian expression atlas von Forrest, Alistair R R, Kawaji, Hideya, Rehli, Michael, Baillie, J Kenneth, de Hoon, Michiel J L, Haberle, Vanja, Lassmann, Timo, Kulakovskiy, Ivan V, Lizio, Marina, Itoh, Masayoshi, Andersson, Robin, Mungall, Christopher J, Meehan, Terrence F, Schmeier, Sebastian, Bertin, Nicolas, Jørgensen, Mette, Dimont, Emmanuel, Arner, Erik, Schmidl, Christian, Schaefer, Ulf, Medvedeva, Yulia A, Plessy, Charles, Vitezic, Morana, Severin, Jessica, Semple, Colin A, Ishizu, Yuri, Young, Robert S, Francescatto, Margherita, Alam, Intikhab, Albanese, Davide, Altschuler, Gabriel M, Arakawa, Takahiro, Archer, John A C, Arner, Peter, Babina, Magda, Rennie, Sarah, Balwierz, Piotr J, Beckhouse, Anthony G, Pradhan-Bhatt, Swati, Blake, Judith A, Blumenthal, Antje, Bodega, Beatrice, Bonetti, Alessandro, Briggs, James, Brombacher, Frank, Burroughs, A Maxwell, Califano, Andrea, Cannistraci, Carlo V, Carbajo, Daniel, Chen, Yun, Chierici, Marco, Ciani, Yari, Clevers, Hans C, Dalla, Emiliano, Davis, Carrie A, Detmar, Michael, Diehl, Alexander D, Dohi, Taeko, Drabløs, Finn, Edge, Albert S B, Edinger, Matthias, Ekwall, Karl, Endoh, Mitsuhiro, Enomoto, Hideki, Fagiolini, Michela, Fairbairn, Lynsey, Fang, Hai, Farach-Carson, Mary C, Faulkner, Geoffrey J, Favorov, Alexander V, Fisher, Malcolm E, Frith, Martin C, Fujita, Rie, Fukuda, Shiro, Furlanello, Cesare, Furino, Masaaki, Furusawa, Jun-ichi, Geijtenbeek, Teunis B, Gibson, Andrew P, Gingeras, Thomas, Goldowitz, Daniel, Gough, Julian, Guhl, Sven, Guler, Reto, Gustincich, Stefano, Ha, Thomas J, Hamaguchi, Masahide, Hara, Mitsuko, Harbers, Matthias, Harshbarger, Jayson, Hasegawa, Akira, Hasegawa, Yuki, Hashimoto, Takehiro, Herlyn, Meenhard, Hitchens, Kelly J, Ho Sui, Shannan J, Hofmann, Oliver M, Hoof, Ilka, Hori, Furni, Huminiecki, Lukasz

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