P11.02 A complex human tumor organoid model consisting of malignant cells, fibroblasts and immune cells enlights the effect of chemotherapy-induced senescent tumor cells on NK-cell... von Ammon, D, Fabits, M, Sykora, M, Kabiljo, J, Theophil, A, Atanasova, V, Dolznig, H, Bergmann, M

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P04.04 Single cell transcriptomics reveals cancer associated fibroblasts enable modeling of tumor associated macrophage like phenotypes and treatment responses in primary colorecta... von Kabiljo, J, Theophil, A, Homola, J, Renner, A, Karall, J, Hartman, N, Stang, S, Tran, L, Laengle, J, Kulu, A, Chen, A, Fabits, M, Atanasova, V, Walczak, H, Herndler-Brandstetter, D, Egger, G, Dolznig, H, Kusienicka, A, Farlik, M, Bergmann, M

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Prospective screening and proposed treatment algorithm for immune checkpoint inhibitor induced myositis in neoadjuvant-treated rectal cancer patients: data from the phase II CHINOR... von Zirnbauer, R, Hametner, S, Bergler-Klein, J, Kuehrer, I, Kulu, A, Ammon, D, Kabiljo, J, Stift, A, Schmid, R, Laengle, F, Machold, K, Lambrechts, D, Blueml, S, Bergmann, M, Laengle, J

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Histone deacetylase inhibitors valproic acid and vorinostat enhance trastuzumab-mediated antibody-dependent cell-mediated phagocytosis von Laengle, J., Kabiljo, J., Homola, J., Hunter, L., Egger, G., Bergmann, M.

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An oncolytic influenza A virus expressing the mycobacterial ESAT-6 protein von Lazlo, V., Kabiljo, J., Török, S., Karl, V., Hunter, L., Vasiliev, K., Studkova, M., Dome, B., Egorov, A., Bergmann, M.M.

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P09.04 Oncolytic H5N1 influenza strain displays superior therapeutic properties independent of immuno-stimulatory interleukin-2 transgene expression von Kabiljo, J, Kuznetsova, I, Homola, J, Prodinger, S, Laengle, J, Sachet, M, Egorov, A, Bergmann, M

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P08.07 Identification of stress granule formation as a therapeutic target in chemotherapy treated colorectal cancer von Renner, A, Wolf, B, Krajic, N, Kabiljo, J, Zirnbauer, R, Ammon, D, Strieder, J, Dolznig, H, Fabits, M, Laengle, J, Bergmann, M

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P09.18 TNF induction in essential for oncolytic influenza A virus induced cancer regression and tumor associated macrophage repolarization von Homola, J, Kabiljo, J, Theophil, A, Hartman, N, Kovacs, I, Karall, J, Lechner, KE, Klicka, C, Laengle, J, Fabits, M, Atanasova, VS, Dome, B, Dolznig, H, Egger, G, Walczak, H, Bergamnn, M

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P08.04 Neoadjuvant chemoradiotherapy with sequential ipilimumab and nivolumab in rectal cancer (CHINOREC): a prospective randomized, open-label, multicenter, phase II clinical tria... von Laengle, J, Kuehrer, I, Pils, D, Kabiljo, J, Wöran, K, Stift, J, Herbst, F, Dauser, B, Monschein, M, Razek, P, Haegele, S, Herac, M, Hulla, W, Bitterman, C, Laengle, F, Tamandl, D, Widder, J, Schmid, R, Bergmann, M

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DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for human next-generation sequencing data von Marriott, Heather, Kabiljo, Renata, Al Khleifat, Ahmad, Dobson, Richard J, Al-Chalabi, Ammar, Iacoangeli, Alfredo

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A realistic assessment of methods for extracting gene/protein interactions from free text von Kabiljo, Renata, Clegg, Andrew B, Shepherd, Adrian J

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GEOexplorer: a webserver for gene expression analysis and visualisation von Hunt, Guy P, Grassi, Luigi, Henkin, Rafael, Smeraldi, Fabrizio, Spargo, Thomas P, Kabiljo, Renata, Koks, Sulev, Ibrahim, Zina, Dobson, Richard J B, Al-Chalabi, Ammar, Barnes, Michael R, Iacoangeli, Alfredo

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Cyclic alternating pattern in obstructive sleep apnea: A preliminary study von Gnoni, Valentina, Drakatos, Panagis, Higgins, Sean, Duncan, Iain, Wasserman, Danielle, Kabiljo, Renata, Mutti, Carlotta, Halasz, Peter, Goadsby, Peter J., Leschziner, Guy D., Rosenzweig, Ivana

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Unsupervised machine learning identifies distinct ALS molecular subtypes in post-mortem motor cortex and blood expression data von Marriott, Heather, Kabiljo, Renata, Hunt, Guy P, Khleifat, Ahmad Al, Jones, Ashley, Troakes, Claire, Pfaff, Abigail L, Quinn, John P, Koks, Sulev, Dobson, Richard J, Schwab, Patrick, Al-Chalabi, Ammar, Iacoangeli, Alfredo

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Molecular dynamics analysis of superoxide dismutase 1 mutations suggests decoupling between mechanisms underlying ALS onset and progression von Kalia, Munishikha, Miotto, Mattia, Ness, Deborah, Opie-Martin, Sarah, Spargo, Thomas P., Di Rienzo, Lorenzo, Biagini, Tommaso, Petrizzelli, Francesco, Al Khleifat, Ahmad, Kabiljo, Renata, Mazza, Tommaso, Ruocco, Giancarlo, Milanetti, Edoardo, Dobson, Richard JB, Al-Chalabi, Ammar, Iacoangeli, Alfredo

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An assessment of bioinformatics tools for the detection of human endogenous retroviral insertions in short-read genome sequencing data von Bowles, Harry, Kabiljo, Renata, Al Khleifat, Ahmad, Jones, Ashley, Quinn, John P, Dobson, Richard J B, Swanson, Chad M, Al-Chalabi, Ammar, Iacoangeli, Alfredo

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RetroSnake: A modular pipeline to detect human endogenous retroviruses in genome sequencing data von Kabiljo, Renata, Bowles, Harry, Marriott, Heather, Jones, Ashley R., Bouton, Clement R., Dobson, Richard J.B., Quinn, John P., Al Khleifat, Ahmad, Swanson, Chad M., Al-Chalabi, Ammar, Iacoangeli, Alfredo

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DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for human next-generation sequencing data von Marriott, H, Kabiljo, R, Al Khleifat, A, Dobson, RJ, Al-Chalabi, A, Iacoangeli, A

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Unsupervised machine learning identifies distinct ALS molecular subtypes in post-mortem motor cortex and blood expression data von Marriott, H, Kabiljo, R, Hunt, GP, Khleifat, AA, Jones, A, Troakes, C, Pfaff, AL, Quinn, JP, Koks, S, Dobson, RJ, Schwab, P, Al-Chalabi, A, Iacoangeli, A

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An assessment of bioinformatics tools for the detection of human endogenous retroviral insertions in short-read genome sequencing data von Bowles, H, Kabiljo, R, Al Khleifat, A, Jones, A, Quinn, JP, Dobson, RJB, Swanson, CM, Al-Chalabi, A, Iacoangeli, A

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