Critical dynamics in biological Boolean networks follows from symmetric response to input genes von ÇOBAN, HAMZA, KABAKÇIOĞLU, ALKAN

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Role of Helicity in DNA Hairpin Folding Dynamics von Li, Huaping, Kabakçıoğlu, Alkan

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Siamese Graph Convolutional Network quantifies increasing structure-function discrepancy over the cognitive decline continuum von Gamgam, Gurur, Yıldırım, Zerrin, Kabakçıoğlu, Alkan, Gurvit, Hakan, Demiralp, Tamer, Acar, Burak

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Reorganization of brain connectivity across the spectrum of clinical cognitive decline von Yüksel Dal, Demet, Yıldırım, Zerrin, Gürvit, Hakan, Kabakçıoğlu, Alkan, Acar, Burak

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Tension propagation during DNA hairpin folding von Li, Huaping, Kabakç o lu, Alkan

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Genome-wide target analysis of NEUROD2 provides new insights into regulation of cortical projection neuron migration and differentiation von Bayam, Efil, Sahin, Gulcan Semra, Guzelsoy, Gizem, Guner, Gokhan, Kabakcioglu, Alkan, Ince-Dunn, Gulayse

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Mode coupling points to functionally important residues in myosin II von Varol, Onur, Yuret, Deniz, Erman, Burak, Kabakçıoğlu, Alkan

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Terminal neuron localization to the upper cortical plate is controlled by the transcription factor NEUROD2 von Guzelsoy, Gizem, Akkaya, Cansu, Atak, Dila, Dunn, Cory D., Kabakcioglu, Alkan, Ozlu, Nurhan, Ince-Dunn, Gulayse

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The information coded in the yeast response elements accounts for most of the topological properties of its transcriptional regulation network von Balcan, Duygu, Kabakçioğlu, Alkan, Mungan, Muhittin, Erzan, Ayşe

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Coherent organization in gene regulation: a study on six networks von Aral, Ne e, Kabakç o lu, Alkan

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Twist-writhe partitioning in a coarse-grained DNA minicircle model von Sayar, Mehmet, Avşaroğlu, Bariş, Kabakçioğlu, Alkan

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Coherent regulation in yeast's cell-cycle network von Aral, Ne e, Kabakç o lu, Alkan

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Constrained thermal denaturation of DNA under fixed linking number von Bar, Amir, Kabakçıoğlu, Alkan, Mukamel, David

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A Quantum Otto Engine with Shortcuts to Thermalization and Adiabaticity von Ali, Pedram, Kadıoğlu, Serhat C, Alkan Kabakçıoğlu, Müstecaplıoğlu, Özgür E

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Denaturation of circular DNA: supercoils and overtwist von Bar, Amir, Kabakçıoğlu, Alkan, Mukamel, David

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Macroscopic loop formation in circular DNA denaturation von Kabakçıoğlu, Alkan, Bar, Amir, Mukamel, David

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Role of helicity in DNA hairping folding dynamics von Li, Huaping, Alkan Kabakcioglu

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Deep spin-glass hysteresis-area collapse and scaling in the three-dimensional ±J Ising model von Sarıyer, Ozan S, Kabakçıoğlu, Alkan, Berker, A Nihat

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Function changing mutations in glucocorticoid receptor evolution correlate with their relevance to mode coupling von Kav, Batuhan, Öztürk, Murat, Kabakçιoğlu, Alkan

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Functionally Important Residues from Mode Coupling during Short-Time Protein Dynamics von Varol, Onur, Yuret, Deniz, Erman, Burak, Kabakcioglu, Alkan

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