ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation von Bentsen, Mette, Goymann, Philipp, Schultheis, Hendrik, Klee, Kathrin, Petrova, Anastasiia, Wiegandt, René, Fust, Annika, Preussner, Jens, Kuenne, Carsten, Braun, Thomas, Kim, Johnny, Looso, Mario

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Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement von Jia, Guangshuai, Preussner, Jens, Chen, Xi, Guenther, Stefan, Yuan, Xuejun, Yekelchyk, Michail, Kuenne, Carsten, Looso, Mario, Zhou, Yonggang, Teichmann, Sarah, Braun, Thomas

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Reciprocal analyses in zebrafish and medaka reveal that harnessing the immune response promotes cardiac regeneration von Lai, Shih-Lei, Marín-Juez, Rubén, Moura, Pedro Luís, Kuenne, Carsten, Lai, Jason Kuan Han, Tsedeke, Ayele Taddese, Guenther, Stefan, Looso, Mario, Stainier, Didier Yr

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Genetic compensation triggered by mutant mRNA degradation von El-Brolosy, Mohamed A., Kontarakis, Zacharias, Rossi, Andrea, Kuenne, Carsten, Günther, Stefan, Fukuda, Nana, Kikhi, Khrievono, Boezio, Giulia L. M., Takacs, Carter M., Lai, Shih-Lei, Fukuda, Ryuichi, Gerri, Claudia, Giraldez, Antonio J., Stainier, Didier Y. R.

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Pioneering function of Isl1 in the epigenetic control of cardiomyocyte cell fate von Gao, Rui, Liang, Xingqun, Cheedipudi, Sirisha, Cordero, Julio, Jiang, Xue, Zhang, Qingquan, Caputo, Luca, Günther, Stefan, Kuenne, Carsten, Ren, Yonggang, Bhattacharya, Shoumo, Yuan, Xuejun, Barreto, Guillermo, Chen, Yihan, Braun, Thomas, Evans, Sylvia M., Sun, Yunfu, Dobreva, Gergana

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AP-1 Contributes to Chromatin Accessibility to Promote Sarcomere Disassembly and Cardiomyocyte Protrusion During Zebrafish Heart Regeneration von Beisaw, Arica, Kuenne, Carsten, Guenther, Stefan, Dallmann, Julia, Wu, Chi-Chung, Bentsen, Mette, Looso, Mario, Stainier, Didier Y.R.

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Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes von Hain, Torsten, Ghai, Rohit, Billion, André, Kuenne, Carsten Tobias, Steinweg, Christiane, Izar, Benjamin, Mohamed, Walid, Mraheil, Mobarak Abu, Domann, Eugen, Schaffrath, Silke, Kärst, Uwe, Goesmann, Alexander, Oehm, Sebastian, Pühler, Alfred, Merkl, Rainer, Vorwerk, Sonja, Glaser, Philippe, Garrido, Patricia, Rusniok, Christophe, Buchrieser, Carmen, Goebel, Werner, Chakraborty, Trinad

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Stimulation of glycolysis promotes cardiomyocyte proliferation after injury in adult zebrafish von Fukuda, Ryuichi, Marín‐Juez, Rubén, El‐Sammak, Hadil, Beisaw, Arica, Ramadass, Radhan, Kuenne, Carsten, Guenther, Stefan, Konzer, Anne, Bhagwat, Aditya M, Graumann, Johannes, Stainier, Didier YR

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The flow responsive transcription factor Klf2 is required for myocardial wall integrity by modulating Fgf signaling von Rasouli, Seyed Javad, El-Brolosy, Mohamed, Tsedeke, Ayele Taddese, Bensimon-Brito, Anabela, Ghanbari, Parisa, Maischein, Hans-Martin, Kuenne, Carsten, Stainier, Didier Y

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Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome von Kuenne, Carsten, Billion, André, Mraheil, Mobarak Abu, Strittmatter, Axel, Daniel, Rolf, Goesmann, Alexander, Barbuddhe, Sukhadeo, Hain, Torsten, Chakraborty, Trinad

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UROPA: a tool for Universal RObust Peak Annotation von Kondili, Maria, Fust, Annika, Preussner, Jens, Kuenne, Carsten, Braun, Thomas, Looso, Mario

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Distinct mechanisms regulate ventricular and atrial chamber wall formation von Albu, Marga, Affolter, Eileen, Gentile, Alessandra, Xu, Yanli, Kikhi, Khrievono, Howard, Sarah, Kuenne, Carsten, Priya, Rashmi, Gunawan, Felix, Stainier, Didier Y. R.

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TF-COMB – Discovering grammar of transcription factor binding sites von Bentsen, Mette, Heger, Vanessa, Schultheis, Hendrik, Kuenne, Carsten, Looso, Mario

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Loss of pyruvate kinase M2 limits growth and triggers innate immune signaling in endothelial cells von Stone, Oliver A., El-Brolosy, Mohamed, Wilhelm, Kerstin, Liu, Xiaojing, Romão, Ana M., Grillo, Elisabetta, Lai, Jason K. H., Günther, Stefan, Jeratsch, Sylvia, Kuenne, Carsten, Lee, I-Ching, Braun, Thomas, Santoro, Massimo M., Locasale, Jason W., Potente, Michael, Stainier, Didier Y. R.

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The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages von Mraheil, Mobarak A, Billion, André, Mohamed, Walid, Mukherjee, Krishnendu, Kuenne, Carsten, Pischimarov, Jordan, Krawitz, Christian, Retey, Julia, Hartsch, Thomas, Chakraborty, Trinad, Hain, Torsten

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Induction of interferon-stimulated genes and cellular stress pathways by morpholinos in zebrafish von Lai, Jason K.H., Gagalova, Kristina K., Kuenne, Carsten, El-Brolosy, Mohamed A., Stainier, Didier Y.R.

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Age-dependent increase of oxidative stress regulates microRNA-29 family preserving cardiac health von Heid, Johanna, Cencioni, Chiara, Ripa, Roberto, Baumgart, Mario, Atlante, Sandra, Milano, Giuseppina, Scopece, Alessandro, Kuenne, Carsten, Guenther, Stefan, Azzimato, Valerio, Farsetti, Antonella, Rossi, Giacomo, Braun, Thomas, Pompilio, Giulio, Martelli, Fabio, Zeiher, Andreas M., Cellerino, Alessandro, Gaetano, Carlo, Spallotta, Francesco

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Intracellular Gene Expression Profile of Listeria monocytogenes von Chatterjee, Som Subhra, Hossain, Hamid, Otten, Sonja, Kuenne, Carsten, Kuchmina, Katja, Machata, Silke, Domann, Eugen, Chakraborty, Trinad, Hain, Torsten

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Comparative analysis of plasmids in the genus Listeria von Kuenne, Carsten, Voget, Sonja, Pischimarov, Jordan, Oehm, Sebastian, Goesmann, Alexander, Daniel, Rolf, Hain, Torsten, Chakraborty, Trinad

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i2dash: Creation of Flexible, Interactive, and Web-based Dashboards for Visualization of Omics Data von Ustjanzew, Arsenij, Preussner, Jens, Bentsen, Mette, Kuenne, Carsten, Looso, Mario

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