FoxA1 Specifies Unique Androgen and Glucocorticoid Receptor Binding Events in Prostate Cancer Cells von SAHU, Biswajyoti, LAAKSO, Marko, PIHLAJAMAA, Päivi, OVASKA, Kristian, SINIELNIKOV, Levgenii, HAUTANIEMI, Sampsa, JÄNNE, Olli A

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Integrated network analysis platform for protein-protein interactions von Wu, Jianmin, Vallenius, Tea, Ovaska, Kristian, Westermarck, Jukka, Mäkelä, Tomi P, Hautaniemi, Sampsa

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Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme von Ovaska, Kristian, Laakso, Marko, Haapa-Paananen, Saija, Louhimo, Riku, Chen, Ping, Aittomäki, Viljami, Valo, Erkka, Núñez-Fontarnau, Javier, Rantanen, Ville, Karinen, Sirkku, Nousiainen, Kari, Lahesmaa-Korpinen, Anna-Maria, Miettinen, Minna, Saarinen, Lilli, Kohonen, Pekka, Wu, Jianmin, Westermarck, Jukka, Hautaniemi, Sampsa

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Comprehensive evaluation of coding region point mutations in microsatellite‐unstable colorectal cancer von Kondelin, Johanna, Salokas, Kari, Saarinen, Lilli, Ovaska, Kristian, Rauanheimo, Heli, Plaketti, Roosa‐Maria, Hamberg, Jiri, Liu, Xiaonan, Yadav, Leena, Gylfe, Alexandra E, Cajuso, Tatiana, Hänninen, Ulrika A, Palin, Kimmo, Ristolainen, Heikki, Katainen, Riku, Kaasinen, Eevi, Tanskanen, Tomas, Aavikko, Mervi, Taipale, Minna, Taipale, Jussi, Renkonen‐Sinisalo, Laura, Lepistö, Anna, Koskensalo, Selja, Böhm, Jan, Mecklin, Jukka‐Pekka, Ongen, Halit, Dermitzakis, Emmanouil T, Kilpivaara, Outi, Vahteristo, Pia, Turunen, Mikko, Hautaniemi, Sampsa, Tuupanen, Sari, Karhu, Auli, Välimäki, Niko, Varjosalo, Markku, Pitkänen, Esa, Aaltonen, Lauri A

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Fast gene ontology based clustering for microarray experiments von Ovaska, Kristian, Laakso, Marko, Hautaniemi, Sampsa

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Transmembrane prostatic acid phosphatase (TMPAP) interacts with snapin and deficient mice develop prostate adenocarcinoma von Quintero, Ileana B, Herrala, Annakaisa M, Araujo, César L, Pulkka, Anitta E, Hautaniemi, Sampsa, Ovaska, Kristian, Pryazhnikov, Evgeny, Kulesskiy, Evgeny, Ruuth, Maija K, Soini, Ylermi, Sormunen, Raija T, Khirug, Leonard, Vihko, Pirkko T

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Using Semantic Similarities and csbl.go for Analyzing Microarray Data von Ovaska, Kristian

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Integrative analysis of deep sequencing data identifies estrogen receptor early response genes and links ATAD3B to poor survival in breast cancer von Ovaska, Kristian, Matarese, Filomena, Grote, Korbinian, Charapitsa, Iryna, Cervera, Alejandra, Liu, Chengyu, Reid, George, Seifert, Martin, Stunnenberg, Hendrik G, Hautaniemi, Sampsa

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Dual role of FoxA1 in androgen receptor binding to chromatin, androgen signalling and prostate cancer von Sahu, Biswajyoti, Laakso, Marko, Ovaska, Kristian, Mirtti, Tuomas, Lundin, Johan, Rannikko, Antti, Sankila, Anna, Turunen, Juha-Pekka, Lundin, Mikael, Konsti, Juho, Vesterinen, Tiina, Nordling, Stig, Kallioniemi, Olli, Hautaniemi, Sampsa, Jänne, Olli A

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Candidate susceptibility variants for esophageal squamous cell carcinoma von Donner, Iikki, Katainen, Riku, Tanskanen, Tomas, Kaasinen, Eevi, Aavikko, Mervi, Ovaska, Kristian, Artama, Miia, Pukkala, Eero, Aaltonen, Lauri A.

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Anduril 2: upgraded large-scale data integration framework von Cervera, Alejandra, Rantanen, Ville, Ovaska, Kristian, Laakso, Marko, Nuñez-Fontarnau, Javier, Alkodsi, Amjad, Casado, Julia, Facciotto, Chiara, Häkkinen, Antti, Louhimo, Riku, Karinen, Sirkku, Zhang, Kaiyang, Lavikka, Kari, Lyly, Lauri, Pal Singh, Maninder, Hautaniemi, Sampsa

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Transmembrane prostatic acid phosphatase (TMPAP) delays cells in G1 phase of the cell cycle: TMPAP Regulates Cell Growth von Araujo, César L., Quintero, Ileana B., Ovaska, Kristian, Herrala, Annakaisa M., Hautaniemi, Sampsa, Vihko, Pirkko T.

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Molecular characterization of subcutaneous panniculitis-like T-cell lymphoma reveals upregulation of immunosuppression- and autoimmunity-associated genes von Maliniemi, Pilvi, Hahtola, Sonja, Ovaska, Kristian, Jeskanen, Leila, Väkevä, Liisa, Jäntti, Kirsi, Stadler, Rudolf, Michonneau, David, Fraitag, Sylvie, Hautaniemi, Sampsa, Ranki, Annamari

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Transmembrane prostatic acid phosphatase (TMPAP) delays cells in G1 phase of the cell cycle von Araujo, César L., Quintero, Ileana B., Ovaska, Kristian, Herrala, Annakaisa M., Hautaniemi, Sampsa, Vihko, Pirkko T.

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Neuron navigator 3 alterations in nervous system tumors associate with tumor malignancy grade and prognosis von Carlsson, Emilia, Krohn, Kai, Ovaska, Kristian, Lindberg, Pia, Häyry, Valtteri, Maliniemi, Pilvi, Lintulahti, Anu, Korja, Miikka, Kivisaari, Riku, Hussein, Samer, Sarna, Seppo, Niiranen, Kirsi, Hautaniemi, Sampsa, Haapasalo, Hannu, Ranki, Annamari

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Genomic Region Operation Kit for Flexible Processing of Deep Sequencing Data von Ovaska, Kristian, Lyly, Lauri, Sahu, Biswajyoti, Janne, Olli A., Hautaniemi, Sampsa

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NAV3 copy number changes and target genes in basal and squamous cell cancers von Maliniemi, Pilvi, Carlsson, Emilia, Kaukola, Anna, Ovaska, Kristian, Niiranen, Kirsi, Saksela, Olli, Jeskanen, Leila, Hautaniemi, Sampsa, Ranki, Annamari

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124: Immunotolerance-inducing IDO-1 and Th1-cytokines are upregulated in subcutaneous panniculitis-like T-cell lymphoma; signs of an immunosuppressive microenvironment von Maliniemi, Pilvi, Hahtola, Sonja, Ovaska, Kristian, Jeskanen, Leila, Väkevä, Liisa, Niiranen, Kirsi, Stadler, Rudolf, Michonneau, David, Fraitag, Sylvie, Hautaniemi, Sampsa, Ranki, Annamari

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124 von Maliniemi, Pilvi, Hahtola, Sonja, Ovaska, Kristian, Jeskanen, Leila, Väkevä, Liisa, Niiranen, Kirsi, Stadler, Rudolf, Michonneau, David, Fraitag, Sylvie, Hautaniemi, Sampsa, Ranki, Annamari

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Integrative Analysis of Deep Sequencing Data Identifies Estrogen Receptor Early Response Genes and Links ATAD3B to Poor Survival in Breast Cancer: e1003100 von Ovaska, Kristian, Matarese, Filomena, Grote, Korbinian, Charapitsa, Iryna, Cervera, Alejandra, Liu, Chengyu, Reid, George, Seifert, Martin, Stunnenberg, Hendrik G, Hautaniemi, Sampsa

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