A targeted proteomics-based pipeline for verification of biomarkers in plasma von Paulovich, Amanda G, Whiteaker, Jeffrey R, Lin, Chenwei, Kennedy, Jacob, Hou, Liming, Trute, Mary, Sokal, Izabela, Yan, Ping, Schoenherr, Regine M, Zhao, Lei, Voytovich, Uliana J, Kelly-Spratt, Karen S, Krasnoselsky, Alexei, Gafken, Philip R, Hogan, Jason M, Jones, Lisa A, Wang, Pei, Amon, Lynn, Chodosh, Lewis A, Nelson, Peter S, McIntosh, Martin W, Kemp, Christopher J

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Occurrence of Autoantibodies to Annexin I, 14-3-3 Theta and LAMR1 in Prediagnostic Lung Cancer Sera von JI QIU, CHOI, Gina, BARNETT, Matt J, THORNQUIST, Mark D, GOODMAN, Gary E, BRENNER, Dean E, ZIDING FENG, HANASH, Samir M, LIN LI, HONG WANG, PITTERI, Sharon J, PEREIRA-FACA, Sandra R, KRASNOSELSKY, Alexei L, RANDOLPH, Timothy W, OMENN, Gilbert S, EDELSTEIN, Cim

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Comprehensive Proteomic Analysis of Influenza Virus Polymerase Complex Reveals a Novel Association with Mitochondrial Proteins and RNA Polymerase Accessory Factors von BRADEL-TRETHEWAY, Birgit G, MATTIACIO, Jonelle L, KRASNOSELSKY, Alexei, STEVENSON, Catherine, PURDY, David, DEWHURST, Stephen, KATZE, Michael G

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A mouse to human search for plasma proteome changes associated with pancreatic tumor development von Faca, Vitor M, Song, Kenneth S, Wang, Hong, Zhang, Qing, Krasnoselsky, Alexei L, Newcomb, Lisa F, Plentz, Ruben R, Gurumurthy, Sushma, Redston, Mark S, Pitteri, Sharon J, Pereira-Faca, Sandra R, Ireton, Renee C, Katayama, Hiroyuki, Glukhova, Veronika, Phanstiel, Douglas, Brenner, Dean E, Anderson, Michelle A, Misek, David, Scholler, Nathalie, Urban, Nicole D, Barnett, Matt J, Edelstein, Cim, Goodman, Gary E, Thornquist, Mark D, McIntosh, Martin W, DePinho, Ronald A, Bardeesy, Nabeel, Hanash, Samir M

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Contribution of Protein Fractionation to Depth of Analysis of the Serum and Plasma Proteomes von Faca, Vitor, Pitteri, Sharon J, Newcomb, Lisa, Glukhova, Veronika, Phanstiel, Doug, Krasnoselsky, Alexei, Zhang, Qing, Struthers, Jason, Wang, Hong, Eng, Jimmy, Fitzgibbon, Matt, McIntosh, Martin, Hanash, Samir

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cDNA array-CGH profiling identifies genomic alterations specific to stage and MYCN-amplification in neuroblastoma von Chen, Qing-Rong, Bilke, Sven, Wei, Jun S, Whiteford, Craig C, Cenacchi, Nicola, Krasnoselsky, Alexei L, Greer, Braden T, Son, Chang-Gue, Westermann, Frank, Berthold, Frank, Schwab, Manfred, Catchpoole, Daniel, Khan, Javed

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Prediction of clinical outcome using gene expression profiling and artificial neural networks for patients with neuroblastoma von WEI, Jun S, GREER, Braden T, CATCHPOOLE, Daniel, BERTHOLD, Frank, SCHWAB, Manfred, KHAN, Javed, WESTERMANN, Frank, STEINBERG, Seth M, SON, Chang-Gue, CHEN, Qing-Rong, WHITEFORD, Craig C, BILKE, Sven, KRASNOSELSKY, Alexei L, CENACCHI, Nicola

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Quantitative proteomic analysis of HIV-1 infected CD4+ T cells reveals an early host response in important biological pathways: Protein synthesis, cell proliferation, and T-cell ac... von Navare, Arti T, Sova, Pavel, Purdy, David E, Weiss, Jeffrey M, Wolf-Yadlin, Alejandro, Korth, Marcus J, Chang, Stewart T, Proll, Sean C, Jahan, Tahmina A, Krasnoselsky, Alexei L, Palermo, Robert E, Katze, Michael G

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Identification of 14-3-3θ as an Antigen that Induces a Humoral Response in Lung Cancer von PEREIRA-FACA, Sandra R, KUICK, Rork, LANDI, Maria Teresa, CAPORASO, Neil, PFEIFFER, Ruth, EDELSTEIN, Cim, GOODMAN, Gary, BARNETT, Matt, THORNQUIST, Mark, BRENNER, Dean, HANASH, Samir M, PURAVS, Eric, QING ZHANG, KRASNOSELSKY, Alexei L, PHANSTIEL, Douglas, JI QIU, MISEK, David E, HINDERER, Robert, TAMMEMAGI, Martin

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Virology: Influenza's tale of tails von Krasnoselsky, Alexei L, Katze, Michael G

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Influenza's tale of tails von Krasnoselsky, Alexei L., Katze, Michael G.

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Innovative proteomic approaches for cancer biomarker discovery von Faca, Vitor, Krasnoselsky, Alexei, Hanash, Samir

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Early transcriptional programming links progression to hepatitis C virus-induced severe liver disease in transplant patients von Rasmussen, Angela L., Tchitchek, Nicolas, Susnow, Nathan J., Krasnoselsky, Alexei L., Diamond, Deborah L., Yeh, Matthew M., Proll, Sean C., Korth, Marcus J., Walters, Kathie-Anne, Lederer, Sharon, Larson, Anne M., Carithers, Robert L., Benecke, Arndt, Katze, Michael G.

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Altered expression of cell cycle genes distinguishes aggressive neuroblastoma von KRASNOSELSKY, Alexei L, WHITEFORD, Craig C, WEI, Jun S, BILKE, Sven, WESTERMANN, Frank, CHEN, Qing-Rong, KHAN, Javed

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Isoform Analysis of LC−MS/MS Data from Multidimensional Fractionation of the Serum Proteome von Krasnoselsky, Alexei L, Faca, Vitor M, Pitteri, Sharon J, Zhang, Qing, Hanash, Samir M

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Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancer von Schoenherr, Regine M., Kelly-Spratt, Karen S., Lin, ChenWei, Whiteaker, Jeffrey R., Liu, Tao, Holzman, Ted, Coleman, Ilsa, Feng, Li-Chia, Lorentzen, Travis D., Krasnoselsky, Alexei L., Wang, Pei, Liu, Yan, Gurley, Kay E., Amon, Lynn M., Schepmoes, Athena A., Moore, Ronald J., Camp II, David G., Chodosh, Lewis A., Smith, Richard D., Nelson, Peter S., McIntosh, Martin W., Kemp, Christopher J., Paulovich, Amanda G.

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Identification of 14-3-3 as an Antigen that Induces a Humoral Response in Lung Cancer von Pereira-Faca, Sandra R., Kuick, Rork, Puravs, Eric, Zhang, Qing, Krasnoselsky, Alexei L., Phanstiel, Douglas, Qiu, Ji, Misek, David E., Hinderer, Robert, Tammemagi, Martin, Landi, Maria Teresa, Caporaso, Neil, Pfeiffer, Ruth, Edelstein, Cim, Goodman, Gary, Barnett, Matt, Thornquist, Mark, Brenner, Dean, Hanash, Samir M.

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H5N1 Virus Causes Significant Perturbations in Host Proteome Very Early in Influenza Virus-Infected Primary Human Monocyte-Derived Macrophages von Cheung, Chung Yan, Chan, Eric Y., Krasnoselsky, Alexei, Purdy, David, Navare, Arti T., Bryan, Janine T., Leung, Carolina K. L., Hui, Kenrie P. Y., Peiris, Joseph Sriyal Malik, Katze, Michael G.

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Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus-mediated liver disease posttransplantation von Diamond, Deborah L., Krasnoselsky, Alexei L., Burnum, Kristin E., Monroe, Matthew E., Webb-Robertson, Bobbie-Jo, McDermott, Jason E., Yeh, Matthew M., Dzib, Jose Felipe Golib, Susnow, Nathan, Strom, Susan, Proll, Sean C., Belisle, Sarah E., Purdy, David E., Rasmussen, Angela L., Walters, Kathie-Anne, Jacobs, Jon M., Gritsenko, Marina A., Camp, David G., Bhattacharya, Renuka, Perkins, James D., Carithers Jr, Robert L., Liou, Iris W., Larson, Anne M., Benecke, Arndt, Waters, Katrina M., Smith, Richard D., Katze, Michael G.

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Plasma Proteome Profiling of a Mouse Model of Breast Cancer Identifies a Set of Up-Regulated Proteins in Common with Human Breast Cancer Cells von Pitteri, Sharon J, Faca, Vitor M, Kelly-Spratt, Karen S, Kasarda, A. Erik, Wang, Hong, Zhang, Qing, Newcomb, Lisa, Krasnoselsky, Alexei, Paczesny, Sophie, Choi, Gina, Fitzgibbon, Matthew, McIntosh, Martin W, Kemp, Christopher J, Hanash, Samir M

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