MIScnn: a framework for medical image segmentation with convolutional neural networks and deep learning von Müller, Dominik, Kramer, Frank

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Towards a guideline for evaluation metrics in medical image segmentation von Müller, Dominik, Soto-Rey, Iñaki, Kramer, Frank

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Data-dependent visualization of biological networks in the web-browser with NDExEdit von Auer, Florian, Mayer, Simone, Kramer, Frank

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An Analysis on Ensemble Learning Optimized Medical Image Classification With Deep Convolutional Neural Networks von Muller, Dominik, Soto-Rey, Inaki, Kramer, Frank

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Robust chest CT image segmentation of COVID-19 lung infection based on limited data von Müller, Dominik, Soto-Rey, Iñaki, Kramer, Frank

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German Medical Named Entity Recognition Model and Data Set Creation Using Machine Translation and Word Alignment: Algorithm Development and Validation von Frei, Johann, Kramer, Frank

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Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer von Chereda, Hryhorii, Bleckmann, Annalen, Menck, Kerstin, Perera-Bel, Júlia, Stegmaier, Philip, Auer, Florian, Kramer, Frank, Leha, Andreas, Beißbarth, Tim

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Multipath: An R Package to Generate Integrated Reproducible Pathway Models von Hammoud, Zaynab, Kramer, Frank

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Estrogen-Dependent Gene Transcription in Human Breast Cancer Cells Relies upon Proteasome-Dependent Monoubiquitination of Histone H2B von PRENZEL, Tanja, BEGUS-NAHRMANN, Yvonne, BEISSBARTH, Tim, JOHNSEN, Steven A, KRAMER, Frank, HENNION, Magali, HSU, Chieh, GORSLER, Theresa, HINTERMAIR, Corinna, EICK, Dirk, KREMMER, Elisabeth, SIMONS, Mikael

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The Histone H2B Monoubiquitination Regulatory Pathway Is Required for Differentiation of Multipotent Stem Cells von Karpiuk, Oleksandra, Najafova, Zeynab, Kramer, Frank, Hennion, Magali, Galonska, Christina, König, Annekatrin, Snaidero, Nicolas, Vogel, Tanja, Shchebet, Andrei, Begus-Nahrmann, Yvonne, Kassem, Moustapha, Simons, Mikael, Shcherbata, Halyna, Beissbarth, Tim, Johnsen, Steven A.

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DrNote: An open medical annotation service von Frei, Johann, Soto-Rey, Iñaki, Kramer, Frank

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Multilayer networks: aspects, implementations, and application in biomedicine von Hammoud, Zaynab, Kramer, Frank

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Use of Creative Frameworks in Health Care to Solve Data and Information Problems: Scoping Review von Mess, Elisabeth Veronica, Kramer, Frank, Krumme, Julia, Kanelakis, Nico, Teynor, Alexandra

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Newly Constructed Network Models of Different WNT Signaling Cascades Applied to Breast Cancer Expression Data von Bayerlová, Michaela, Klemm, Florian, Kramer, Frank, Pukrop, Tobias, Beißbarth, Tim, Bleckmann, Annalen

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Plasma Biomarkers of Myocardial Fibrosis and Remodeling in Terminal Heart Failure Patients Supported by Mechanical Circulatory Support Devices von Milting, Hendrik, MSc, PhD, Ellinghaus, Peter, PhD, Seewald, Michael, PhD, Cakar, Hamdin, MSc, Bohms, Birte, TC, Kassner, Astrid, MSc, Körfer, Reiner, MD, PhD, Klein, Martina, VMD, Krahn, Thomas, PhD, Kruska, Lothar, PhD, El Banayosy, Aly, MD, Kramer, Frank, PhD

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Identification of a microRNA expression signature for chemoradiosensitivity of colorectal cancer cells, involving miRNAs-320a, -224, -132 and let7g von Salendo, Junius, Spitzner, Melanie, Kramer, Frank, Zhang, Xin, Jo, Peter, Wolff, Hendrik A, Kitz, Julia, Kaulfuß, Silke, Beißbarth, Tim, Dobbelstein, Matthias, Ghadimi, Michael, Grade, Marian, Gaedcke, Jochen

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Annotated dataset creation through large language models for non-english medical NLP von Frei, Johann, Kramer, Frank

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Silencing of the Wnt transcription factor TCF4 sensitizes colorectal cancer cells to (chemo-) radiotherapy von Kendziorra, Emil, Ahlborn, Kerstin, Spitzner, Melanie, Rave-Fränk, Margret, Emons, Georg, Gaedcke, Jochen, Kramer, Frank, Wolff, Hendrik A., Becker, Heinz, Beissbarth, Tim, Ebner, Reinhard, Ghadimi, B.Michael, Pukrop, Tobias, Ried, Thomas, Grade, Marian

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The histone methyltransferase DOT1L is required for proper DNA damage response, DNA repair, and modulates chemotherapy responsiveness von Kari, Vijayalakshmi, Raul, Sanjay Kumar, Henck, Jana Maria, Kitz, Julia, Kramer, Frank, Kosinsky, Robyn Laura, Übelmesser, Nadine, Mansour, Wael Yassin, Eggert, Jessica, Spitzner, Melanie, Najafova, Zeynab, Bastians, Holger, Grade, Marian, Gaedcke, Jochen, Wegwitz, Florian, Johnsen, Steven A

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rBiopaxParser--an R package to parse, modify and visualize BioPAX data von Kramer, Frank, Bayerlová, Michaela, Klemm, Florian, Bleckmann, Annalen, Beissbarth, Tim

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