Assessing the Role of Bacterial Innate and Adaptive Immunity as Barriers to Conjugative Plasmids von Siedentop, Berit, Losa Mediavilla, Carlota, Kouyos, Roger D, Bonhoeffer, Sebastian, Chabas, Hélène

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Impact of scaling up dolutegravir on antiretroviral resistance in South Africa: A modeling study von Hauser, Anthony, Kusejko, Katharina, Johnson, Leigh F., Guenthard, Huldrych F., Riou, Julien, Wandeler, Gilles, Egger, Matthias, Kouyos, Roger D.

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Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19 von Tepekule, Burcu, Hauser, Anthony, Kachalov, Viacheslav N., Andresen, Sara, Scheier, Thomas, Schreiber, Peter W., Guenthard, Huldrych F., Kouyos, Roger D.

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A highly virulent variant of HIV-1 circulating in the Netherlands von Wymant, Chris, Bezemer, Daniela, Blanquart, François, Ferretti, Luca, Gall, Astrid, Hall, Matthew, Golubchik, Tanya, Bakker, Margreet, Ong, Swee Hoe, Zhao, Lele, Bonsall, David, de Cesare, Mariateresa, MacIntyre-Cockett, George, Abeler-Dörner, Lucie, Albert, Jan, Bannert, Norbert, Fellay, Jacques, Grabowski, M Kate, Gunsenheimer-Bartmeyer, Barbara, Günthard, Huldrych F, Kivelä, Pia, Kouyos, Roger D, Laeyendecker, Oliver, Meyer, Laurence, Porter, Kholoud, Ristola, Matti, van Sighem, Ard, Berkhout, Ben, Kellam, Paul, Cornelissen, Marion, Reiss, Peter, Fraser, Christophe, Aubert, V, Battegay, M, Bernasconi, E, Böni, J, Braun, D L, Bucher, H C, Burton-Jeangros, C, Calmy, A, Cavassini, M, Dollenmaier, G, Egger, M, Elzi, L, Fehr, J, Fellay, J, Furrer, H, Fux, C A, Gorgievski, M, Günthard, H, Haerry, D, Hasse, B, Hirsch, H H, Hoffmann, M, Hösli, I, Kahlert, C, Kaiser, L, Keiser, O, Klimkait, T, Kouyos, R, Kovari, H, Ledergerber, B, Martinetti, G, de Tejada, B Martinez, Marzolini, C, Metzner, K, Müller, N, Nadal, D, Nicca, D, Pantaleo, G, Rauch, A, Regenass, S, Rudin, C, Schöni-Affolter, F, Schmid, P, Speck, R, Stöckle, M, Tarr, P, Trkola, A, Vernazza, P, Weber, R, Yerly, S, van der Valk, M, Geerlings, S E, Goorhuis, A, Hovius, J W, Lempkes, B, Nellen, F J B, van der Poll, T, Prins, J M, Reiss, P, van Vugt, M, Wiersinga, W J, Wit, F W M N, van Duinen, M, van Eden, J, Hazenberg, A, van Hes, A M H, Pijnappel, F J J, Smalhout, S Y

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Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds von Yang, Wan-Lin, Kouyos, Roger D, Böni, Jürg, Yerly, Sabine, Klimkait, Thomas, Aubert, Vincent, Scherrer, Alexandra U, Shilaih, Mohaned, Hinkley, Trevor, Petropoulos, Christos, Bonhoeffer, Sebastian, Günthard, Huldrych F

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Acquired HIV drug resistance mutations on first-line antiretroviral therapy in Southern Africa: Systematic review and Bayesian evidence synthesis von Hauser, Anthony, Goldstein, Fardo, Reichmuth, Martina L., Kouyos, Roger D., Wandeler, Gilles, Egger, Matthias, Riou, Julien

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Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level von Kachalov, Viacheslav N., Nguyen, Huyen, Balakrishna, Suraj, Salazar-Vizcaya, Luisa, Sommerstein, Rami, Kuster, Stefan P., Hauser, Anthony, zur Wiesch, Pia Abel, Klein, Eili, Kouyos, Roger D.

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Early off-label treatment during pandemics? A dilemma von Jan, Roth A., Tala, Ballouz, Roger, Kouyos D., Manuel, Battegay

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Efficient microbial colony growth dynamics quantification with ColTapp, an automated image analysis application von Bär, Julian, Boumasmoud, Mathilde, Kouyos, Roger D., Zinkernagel, Annelies S., Vulin, Clément

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Antibodies from convalescent plasma promote SARS-CoV-2 clearance in individuals with and without endogenous antibody response von Marconato, Maddalena, Abela, Irene A, Hauser, Anthony, Schwarzmüller, Magdalena, Katzensteiner, Rheliana, Braun, Dominique L, Epp, Selina, Audigé, Annette, Weber, Jacqueline, Rusert, Peter, Schindler, Eméry, Pasin, Chloé, West, Emily, Böni, Jürg, Kufner, Verena, Huber, Michael, Zaheri, Maryam, Schmutz, Stefan, Frey, Beat M, Kouyos, Roger D, Günthard, Huldrych F, Manz, Markus G, Trkola, Alexandra

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Exploring the complexity of the HIV-1 fitness landscape von Kouyos, Roger D, Leventhal, Gabriel E, Hinkley, Trevor, Haddad, Mojgan, Whitcomb, Jeannette M, Petropoulos, Christos J, Bonhoeffer, Sebastian

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Cohort Profile Update: The Swiss HIV Cohort Study (SHCS) von Scherrer, Alexandra U, Traytel, Anna, Braun, Dominique L, Calmy, Alexandra, Battegay, Manuel, Cavassini, Matthias, Furrer, Hansjakob, Schmid, Patrick, Bernasconi, Enos, Stoeckle, Marcel, Kahlert, Christian, Trkola, Alexandra, Kouyos, Roger D, Tarr, Philip, Marzolini, Catia, Wandeler, Gilles, Fellay, Jacques, Bucher, Heiner, Yerly, Sabine, Suter, Franziska, Hirsch, Hans, Huber, Michael, Dollenmaier, Günter, Perreau, Matthieu, Martinetti, Gladys, Rauch, Andri, Günthard, Huldrych F

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Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa von Hauser, Anthony, Kusejko, Katharina, Johnson, Leigh F, Wandeler, Gilles, Riou, Julien, Goldstein, Fardo, Egger, Matthias, Kouyos, Roger D

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Modeling the measles paradox reveals the importance of cellular immunity in regulating viral clearance von Morris, Sinead E, Yates, Andrew J, de Swart, Rik L, de Vries, Rory D, Mina, Michael J, Nelson, Ashley N, Lin, Wen-Hsuan W, Kouyos, Roger D, Griffin, Diane E, Grenfell, Bryan T

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HIV-1 drug resistance in people on dolutegravir-based antiretroviral therapy: a collaborative cohort analysis von Loosli, Tom, Hossmann, Stefanie, Ingle, Suzanne M, Okhai, Hajra, Kusejko, Katharina, Mouton, Johannes, Bellecave, Pantxika, van Sighem, Ard, Stecher, Melanie, d'Arminio Monforte, Antonella, Gill, M John, Sabin, Caroline A, Maartens, Gary, Günthard, Huldrych F, Sterne, Jonathan A C, Lessells, Richard, Egger, Matthias, Kouyos, Roger D

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Hepatitis C virus transmission among human immunodeficiency virus‐infected men who have sex with men: Modeling the effect of behavioral and treatment interventions von Salazar‐Vizcaya, Luisa, Kouyos, Roger D., Zahnd, Cindy, Wandeler, Gilles, Battegay, Manuel, Darling, Katharine Elizabeth Anna, Bernasconi, Enos, Calmy, Alexandra, Vernazza, Pietro, Furrer, Hansjakob, Egger, Matthias, Keiser, Olivia, Rauch, Andri

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Diagnosis of latent tuberculosis infection is associated with reduced HIV viral load and lower risk for opportunistic infections in people living with HIV von Kusejko, Katharina, Gunthard, Huldrych F., Olson, Gregory S., Zens, Kyra, Darling, Katharine, Khanna, Nina, Furrer, Hansjakob, Vetter, Pauline, Bernasconi, Enos, Vernazza, Pietro, Hoffmann, Matthias, Kouyos, Roger D., Nemeth, Johannes

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Frequency and Spectrum of Unexpected Clinical Manifestations of Primary HIV-1 Infection von Braun, Dominique L., Kouyos, Roger D., Balmer, Belinda, Grube, Christina, Weber, Rainer, Günthard, Huldrych F.

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A Treatment-as-Prevention Trial to Eliminate Hepatitis C Among Men Who Have Sex With Men Living With Human Immunodeficiency Virus (HIV) in the Swiss HIV Cohort Study von Braun, Dominique L., Hampel, Benjamin, Ledergerber, Bruno, Grube, Christina, Nguyen, Huyen, Kunzler-Heule, Patrizia, Shah, Cyril, Salazar-Vizcaya, Luisa, Conen, Anna, Flepp, Markus, Stockle, Marcel, Beguelin, Charles, Schmid, Patrick, Rougemont, Mathieu, Delaloye, Julie, Bernasconi, Enos, Nicca, Dunja, Boni, Jurg, Rauch, Andri, Kouyos, Roger D., Gunthard, Huldrych F., Fehr, Jan S.

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The state of affairs in the kingdom of the Red Queen von Salathé, Marcel, Kouyos, Roger D., Bonhoeffer, Sebastian

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