methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles von Akalin, Altuna, Kormaksson, Matthias, Li, Sheng, Garrett-Bakelman, Francine E, Figueroa, Maria E, Melnick, Ari, Mason, Christopher E

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Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia von Akalin, Altuna, Garrett-Bakelman, Francine E, Kormaksson, Matthias, Busuttil, Jennifer, Zhang, Lu, Khrebtukova, Irina, Milne, Thomas A, Huang, Yongsheng, Biswas, Debabrata, Hess, Jay L, Allis, C David, Roeder, Robert G, Valk, Peter J M, Löwenberg, Bob, Delwel, Ruud, Fernandez, Hugo F, Paietta, Elisabeth, Tallman, Martin S, Schroth, Gary P, Mason, Christopher E, Melnick, Ari, Figueroa, Maria E

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DNA Methylation Dynamics of Germinal Center B Cells Are Mediated by AID von Dominguez, Pilar M., Teater, Matt, Chambwe, Nyasha, Kormaksson, Matthias, Redmond, David, Ishii, Jennifer, Vuong, Bao, Chaudhuri, Jayanta, Melnick, Ari, Vasanthakumar, Aparna, Godley, Lucy A., Papavasiliou, F. Nina, Elemento, Olivier, Shaknovich, Rita

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Aberration in DNA methylation in B-cell lymphomas has a complex origin and increases with disease severity von De, Subhajyoti, Shaknovich, Rita, Riester, Markus, Elemento, Olivier, Geng, Huimin, Kormaksson, Matthias, Jiang, Yanwen, Woolcock, Bruce, Johnson, Nathalie, Polo, Jose M, Cerchietti, Leandro, Gascoyne, Randy D, Melnick, Ari, Michor, Franziska

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Mechanism-based epigenetic chemosensitization therapy of diffuse large B-cell lymphoma von Clozel, Thomas, Yang, ShaoNing, Elstrom, Rebecca L, Tam, Wayne, Martin, Peter, Kormaksson, Matthias, Banerjee, Samprit, Vasanthakumar, Aparna, Culjkovic, Biljana, Scott, David W, Wyman, Sarah, Leser, Micheal, Shaknovich, Rita, Chadburn, Amy, Tabbo, Fabrizio, Godley, Lucy A, Gascoyne, Randy D, Borden, Katherine L, Inghirami, Giorgio, Leonard, John P, Melnick, Ari, Cerchietti, Leandro

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Predicting Clinical Outcomes After Radical Nephroureterectomy for Upper Tract Urothelial Carcinoma von Cha, Eugene K, Shariat, Shahrokh F, Kormaksson, Matthias, Novara, Giacomo, Chromecki, Thomas F, Scherr, Douglas S, Lotan, Yair, Raman, Jay D, Kassouf, Wassim, Zigeuner, Richard, Remzi, Mesut, Bensalah, Karim, Weizer, Alon, Kikuchi, Eiji, Bolenz, Christian, Roscigno, Marco, Koppie, Theresa M, Ng, Casey K, Fritsche, Hans-Martin, Matsumoto, Kazumasa, Walton, Thomas J, Ehdaie, Behfar, Tritschler, Stefan, Fajkovic, Harun, Martínez-Salamanca, Juan I, Pycha, Armin, Langner, Cord, Ficarra, Vincenzo, Patard, Jean-Jacques, Montorsi, Francesco, Wood, Christopher G, Karakiewicz, Pierre I, Margulis, Vitaly

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DNA methyltransferase 1 and DNA methylation patterning contribute to germinal center B-cell differentiation von Shaknovich, Rita, Cerchietti, Leandro, Tsikitas, Lucas, Kormaksson, Matthias, De, Subhajyoti, Figueroa, Maria E., Ballon, Gianna, Yang, Shao Ning, Weinhold, Nils, Reimers, Mark, Clozel, Thomas, Luttrop, Karin, Ekstrom, Tomas J., Frank, Jared, Vasanthakumar, Aparna, Godley, Lucy A., Michor, Franziska, Elemento, Olivier, Melnick, Ari

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A Hybrid Mechanism of Action for BCL6 in B Cells Defined by Formation of Functionally Distinct Complexes at Enhancers and Promoters von Hatzi, Katerina, Jiang, Yanwen, Huang, Chuanxin, Garrett-Bakelman, Francine, Gearhart, Micah D., Giannopoulou, Eugenia G., Zumbo, Paul, Kirouac, Kevin, Bhaskara, Srividya, Polo, Jose M., Kormaksson, Matthias, MacKerell, Alexander D., Xue, Fengtian, Mason, Christopher E., Hiebert, Scott W., Prive, Gilbert G., Cerchietti, Leandro, Bardwell, Vivian J., Elemento, Olivier, Melnick, Ari

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Lifetime exposure to violence and other life stressors and hair cortisol concentration in women von Lynch, Rebekka, Aspelund, Thor, Kormáksson, Matthías, Flores-Torres, Mario H., Hauksdóttir, Arna, Arnberg, Filip K., Lajous, Martín, Kirschbaum, Clemens, Valdimarsdóttir, Unnur

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Clinically relevant patient clusters identified by machine learning from the clinical development programme of secukinumab in psoriatic arthritis von Pournara, Effie, Kormaksson, Matthias, Nash, Peter, Ritchlin, Christopher T, Kirkham, Bruce W, Ligozio, Gregory, Pricop, Luminita, Ogdie, Alexis, Coates, Laura C, Schett, Georg, McInnes, Iain B

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Using knockoffs for controlled predictive biomarker identification von Sechidis, Konstantinos, Kormaksson, Matthias, Ohlssen, David

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Effects of inbreeding and genetic modification on Aedes aegypti larval competition and adult energy reserves von Koenraadt, Constantianus JM, Kormaksson, Matthias, Harrington, Laura C

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All that Glitters Is not Gold: Type‐I Error Controlled Variable Selection from Clinical Trial Data von Zimmermann, Manuela R., Baillie, Mark, Kormaksson, Matthias, Ohlssen, David, Sechidis, Konstantinos

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Sequential knockoffs for continuous and categorical predictors: With application to a large psoriatic arthritis clinical trial pool von Kormaksson, Matthias, Kelly, Luke J., Zhu, Xuan, Haemmerle, Sibylle, Pricop, Luminita, Ohlssen, David

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Blue Man Group no ASSIN: Usando Representações Distribuídas para Similaridade Semântica e Inferência Textual von Luciano Barbosa, Paulo Cavalin, Victor Guimarães, Matthias Kormaksson

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Dynamic path analysis for exploring treatment effect mediation processes in clinical trials with time‐to‐event endpoints von Kormaksson, Matthias, Lange, Markus Reiner, Demanse, David, Strohmaier, Susanne, Duan, Jiawei, Xie, Qing, Carbini, Mariana, Bossen, Claudia, Guettner, Achim, Maniero, Antonella

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Variability in DNA methylation defines novel epigenetic subgroups of DLBCL associated with different clinical outcomes von Chambwe, Nyasha, Kormaksson, Matthias, Geng, Huimin, De, Subhajyoti, Michor, Franziska, Johnson, Nathalie A., Morin, Ryan D., Scott, David W., Godley, Lucy A., Gascoyne, Randy D., Melnick, Ari, Campagne, Fabien, Shaknovich, Rita

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Lifetime exposure to violence and other life stressors and hair cortisol concentration in women von Lynch, Rebekka, Kormaksson, Matthias, Aspelund, Thor, Hauksdottir, Arna, Kirschbaum, Clemens, Valdimarsdottir, Unnur

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A framework for longitudinal latent factor modelling of treatment response in clinical trials with applications to Psoriatic Arthritis and Rheumatoid Arthritis von Falck, Fabian, Zhu, Xuan, Ghalebikesabi, Sahra, Kormaksson, Matthias, Vandemeulebroecke, Marc, Zhang, Cong, Martin, Ruvie, Gardiner, Stephen, Kwok, Chun Hei, West, Dominique M., Santos, Luis, Tian, Chengeng, Pang, Yu, Readie, Aimee, Ligozio, Gregory, Gandhi, Kunal K., Nichols, Thomas E., Mallon, Ann-Marie, Kelly, Luke, Ohlssen, David, Nicholson, George

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INTEGRATIVE MODEL-BASED CLUSTERING OF MICROARRAY METHYLATION AND EXPRESSION DATA von Kormaksson, Matthias, Booth, James G., Figueroa, Maria E., Melnick, Ari

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