Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data von Chin, Chen-Shan, Alexander, David H, Marks, Patrick, Klammer, Aaron A, Drake, James, Heiner, Cheryl, Clum, Alicia, Copeland, Alex, Huddleston, John, Eichler, Evan E, Turner, Stephen W, Korlach, Jonas

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The vaginal microbiome and preterm birth von Fettweis, Jennifer M., Serrano, Myrna G., Brooks, J. Paul, Edwards, David J., Girerd, Philippe H., Parikh, Hardik I., Huang, Bernice, Arodz, Tom J., Edupuganti, Laahirie, Glascock, Abigail L., Xu, Jie, Jimenez, Nicole R., Vivadelli, Stephany C., Fong, Stephen S., Sheth, Nihar U., Jean, Sophonie, Lee, Vladimir, Bokhari, Yahya A., Lara, Ana M., Mistry, Shreni D., Duckworth, Robert A., Bradley, Steven P., Koparde, Vishal N., Orenda, X. Valentine, Milton, Sarah H., Rozycki, Sarah K., Matveyev, Andrey V., Wright, Michelle L., Huzurbazar, Snehalata V., Jackson, Eugenie M., Smirnova, Ekaterina, Korlach, Jonas, Tsai, Yu-Chih, Dickinson, Molly R., Brooks, Jamie L., Drake, Jennifer I., Chaffin, Donald O., Sexton, Amber L., Gravett, Michael G., Rubens, Craig E., Wijesooriya, N. Romesh, Hendricks-Muñoz, Karen D., Jefferson, Kimberly K., Strauss, Jerome F., Buck, Gregory A.

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Resolving the complexity of the human genome using single-molecule sequencing von Chaisson, Mark J. P., Huddleston, John, Dennis, Megan Y., Sudmant, Peter H., Malig, Maika, Hormozdiari, Fereydoun, Antonacci, Francesca, Surti, Urvashi, Sandstrom, Richard, Boitano, Matthew, Landolin, Jane M., Stamatoyannopoulos, John A., Hunkapiller, Michael W., Korlach, Jonas, Eichler, Evan E.

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Discovery and genotyping of structural variation from long-read haploid genome sequence data von Huddleston, John, Chaisson, Mark J P, Steinberg, Karyn Meltz, Warren, Wes, Hoekzema, Kendra, Gordon, David, Graves-Lindsay, Tina A, Munson, Katherine M, Kronenberg, Zev N, Vives, Laura, Peluso, Paul, Boitano, Matthew, Chin, Chen-Shin, Korlach, Jonas, Wilson, Richard K, Eichler, Evan E

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Direct detection of DNA methylation during single-molecule, real-time sequencing von Flusberg, Benjamin A, Webster, Dale R, Lee, Jessica H, Travers, Kevin J, Olivares, Eric C, Clark, Tyson A, Korlach, Jonas, Turner, Stephen W

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Platypus and echidna genomes reveal mammalian biology and evolution von Zhou, Yang, Shearwin-Whyatt, Linda, Li, Jing, Song, Zhenzhen, Hayakawa, Takashi, Stevens, David, Fenelon, Jane C., Peel, Emma, Cheng, Yuanyuan, Pajpach, Filip, Bradley, Natasha, Suzuki, Hikoyu, Nikaido, Masato, Damas, Joana, Daish, Tasman, Perry, Tahlia, Zhu, Zexian, Geng, Yuncong, Rhie, Arang, Sims, Ying, Wood, Jonathan, Haase, Bettina, Mountcastle, Jacquelyn, Fedrigo, Olivier, Li, Qiye, Yang, Huanming, Wang, Jian, Johnston, Stephen D., Phillippy, Adam M., Howe, Kerstin, Jarvis, Erich D., Ryder, Oliver A., Kaessmann, Henrik, Donnelly, Peter, Korlach, Jonas, Lewin, Harris A., Graves, Jennifer, Belov, Katherine, Renfree, Marilyn B., Grutzner, Frank, Zhou, Qi, Zhang, Guojie

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Sex chromosome evolution in parasitic nematodes of humans von Foster, Jeremy M., Grote, Alexandra, Mattick, John, Tracey, Alan, Tsai, Yu-Chih, Chung, Matthew, Cotton, James A., Clark, Tyson A., Geber, Adam, Holroyd, Nancy, Korlach, Jonas, Li, Yichao, Libro, Silvia, Lustigman, Sara, Michalski, Michelle L., Paulini, Michael, Rogers, Matthew B., Teigen, Laura, Twaddle, Alan, Welch, Lonnie, Berriman, Matthew, Dunning Hotopp, Julie C., Ghedin, Elodie

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The Epigenomic Landscape of Prokaryotes von Blow, Matthew J, Clark, Tyson A, Daum, Chris G, Deutschbauer, Adam M, Fomenkov, Alexey, Fries, Roxanne, Froula, Jeff, Kang, Dongwan D, Malmstrom, Rex R, Morgan, Richard D, Posfai, Janos, Singh, Kanwar, Visel, Axel, Wetmore, Kelly, Zhao, Zhiying, Rubin, Edward M, Korlach, Jonas, Pennacchio, Len A, Roberts, Richard J

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Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing von Clark, Tyson A, Murray, Iain A, Morgan, Richard D, Kislyuk, Andrey O, Spittle, Kristi E, Boitano, Matthew, Fomenkov, Alexey, Roberts, Richard J, Korlach, Jonas

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Reconstructing complex regions of genomes using long-read sequencing technology von Huddleston, John, Ranade, Swati, Malig, Maika, Antonacci, Francesca, Chaisson, Mark, Hon, Lawrence, Sudmant, Peter H, Graves, Tina A, Alkan, Can, Dennis, Megan Y, Wilson, Richard K, Turner, Stephen W, Korlach, Jonas, Eichler, Evan E

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Real-Time DNA Sequencing from Single Polymerase Molecules von Eid, John, Fehr, Adrian, Gray, Jeremy, Luong, Khai, Lyle, John, Otto, Geoff, Peluso, Paul, Rank, David, Baybayan, Primo, Bettman, Brad, Bibillo, Arkadiusz, Bjornson, Keith, Chaudhuri, Bidhan, Christians, Frederick, Cicero, Ronald, Clark, Sonya, Dalal, Ravindra, deWinter, Alex, Dixon, John, Foquet, Mathieu, Gaertner, Alfred, Hardenbol, Paul, Heiner, Cheryl, Hester, Kevin, Holden, David, Kearns, Gregory, Kong, Xiangxu, Kuse, Ronald, Lacroix, Yves, Lin, Steven, Lundquist, Paul, Ma, Congcong, Marks, Patrick, Maxham, Mark, Murphy, Devon, Park, Insil, Pham, Thang, Phillips, Michael, Roy, Joy, Sebra, Robert, Shen, Gene, Sorenson, Jon, Tomaney, Austin, Travers, Kevin, Trulson, Mark, Vieceli, John, Wegener, Jeffrey, Wu, Dawn, Yang, Alicia, Zaccarin, Denis, Zhao, Peter, Zhong, Frank, Korlach, Jonas, Turner, Stephen

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Real-time tRNA transit on single translating ribosomes at codon resolution von Uemura, Sotaro, Aitken, Colin Echeverría, Korlach, Jonas, Flusberg, Benjamin A., Turner, Stephen W., Puglisi, Joseph D.

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Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine von Song, Chun-Xiao, Clark, Tyson A, Lu, Xing-Yu, Kislyuk, Andrey, Dai, Qing, Turner, Stephen W, He, Chuan, Korlach, Jonas

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Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing von Weirather, Jason L, Afshar, Pegah Tootoonchi, Clark, Tyson A, Tseng, Elizabeth, Powers, Linda S, Underwood, Jason G, Zabner, Joseph, Korlach, Jonas, Wong, Wing Hung, Au, Kin Fai

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A High-Quality De novo Genome Assembly from a Single Mosquito Using PacBio Sequencing von Kingan, Sarah B, Heaton, Haynes, Cudini, Juliana, Lambert, Christine C, Baybayan, Primo, Galvin, Brendan D, Durbin, Richard, Korlach, Jonas, Lawniczak, Mara K N

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A random six-phase switch regulates pneumococcal virulence via global epigenetic changes von Manso, Ana Sousa, Chai, Melissa H., Atack, John M., Furi, Leonardo, De Ste Croix, Megan, Haigh, Richard, Trappetti, Claudia, Ogunniyi, Abiodun D., Shewell, Lucy K., Boitano, Matthew, Clark, Tyson A., Korlach, Jonas, Blades, Matthew, Mirkes, Evgeny, Gorban, Alexander N., Paton, James C., Jennings, Michael P., Oggioni, Marco R.

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Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences von Cao, Bo, Chen, Chao, DeMott, Michael S., Cheng, Qiuxiang, Clark, Tyson A., Xiong, Xiaolin, Zheng, Xiaoqing, Butty, Vincent, Levine, Stuart S., Yuan, George, Boitano, Matthew, Luong, Khai, Song, Yi, Zhou, Xiufen, Deng, Zixin, Turner, Stephen W., Korlach, Jonas, You, Delin, Wang, Lianrong, Chen, Shi, Dedon, Peter C.

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Monoallelically-expressed Noncoding RNAs form nucleolar territories on NOR-containing chromosomes and regulate rRNA expression von Hao, Qinyu, Liu, Minxue, Daulatabad, Swapna Vidhur, Gaffari, Saba, Song, You Jin, Srivastava, Rajneesh, Bhaskar, Shivang, Moitra, Anurupa, Mangan, Hazel, Tseng, Elizabeth, Gilmore, Rachel B, Frier, Susan M, Chen, Xin, Wang, Chengliang, Huang, Sui, Chamberlain, Stormy, Jin, Hong, Korlach, Jonas, McStay, Brian, Sinha, Saurabh, Janga, Sarath C, Prasanth, Supriya, Prasanth, Kannanganattu V

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The complex methylome of the human gastric pathogen Helicobacter pylori von Krebes, Juliane, Morgan, Richard D, Bunk, Boyke, Spröer, Cathrin, Luong, Khai, Parusel, Raphael, Anton, Brian P, König, Christoph, Josenhans, Christine, Overmann, Jörg, Roberts, Richard J, Korlach, Jonas, Suerbaum, Sebastian

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birth of the Epitranscriptome: deciphering the function of RNA modifications von Saletore, Yogesh, Meyer, Kate, Korlach, Jonas, Vilfan, Igor D, Jaffrey, Samie, Mason, Christopher E

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