Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon von Le Luyer, Jérémy, Laporte, Martin, Beacham, Terry D., Kaukinen, Karia H., Withler, Ruth E., Leong, Jong S., Rondeau, Eric B., Koop, Ben F., Bernatchez, Louis

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Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish von Jacobs, Arne, Carruthers, Madeleine, Yurchenko, Andrey, Gordeeva, Natalia V, Alekseyev, Sergey S, Hooker, Oliver, Leong, Jong S, Minkley, David R, Rondeau, Eric B, Koop, Ben F, Adams, Colin E, Elmer, Kathryn R

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Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon von Rougemont, Quentin, Moore, Jean-Sébastien, Leroy, Thibault, Normandeau, Eric, Rondeau, Eric B, Withler, Ruth E, Van Doornik, Donald M, Crane, Penelope A, Naish, Kerry A, Garza, John Carlos, Beacham, Terry D, Koop, Ben F, Bernatchez, Louis

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The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei von Rondeau, Eric B, Minkley, David R, Leong, Jong S, Messmer, Amber M, Jantzen, Johanna R, von Schalburg, Kristian R, Lemon, Craig, Bird, Nathan H, Koop, Ben F

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Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome von Christensen, Kris A, Leong, Jong S, Sakhrani, Dionne, Biagi, Carlo A, Minkley, David R, Withler, Ruth E, Rondeau, Eric B, Koop, Ben F, Devlin, Robert H

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Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication von Gillard, Gareth B, Grønvold, Lars, Røsæg, Line L, Holen, Matilde Mengkrog, Monsen, Øystein, Koop, Ben F, Rondeau, Eric B, Gundappa, Manu Kumar, Mendoza, John, Macqueen, Daniel J, Rohlfs, Rori V, Sandve, Simen R, Hvidsten, Torgeir R

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The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly von Christensen, Kris A, Rondeau, Eric B, Minkley, David R, Leong, Jong S, Nugent, Cameron M, Danzmann, Roy G, Ferguson, Moira M, Stadnik, Agnieszka, Devlin, Robert H, Muzzerall, Robin, Edwards, Michael, Davidson, William S, Koop, Ben F

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Comprehensive analysis of MHC class II genes in teleost fish genomes reveals dispensability of the peptide-loading DM system in a large part of vertebrates von Dijkstra, Johannes M, Grimholt, Unni, Leong, Jong, Koop, Ben F, Hashimoto, Keiichiro

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Sequencing the genome of the Atlantic salmon (Salmo salar) von Davidson, William S, Koop, Ben F, Jones, Steven J M, Iturra, Patricia, Vidal, Rodrigo, Maass, Alejandro, Jonassen, Inge, Lien, Sigbjorn, Omholt, Stig W

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The sockeye salmon genome, transcriptome, and analyses identifying population defining regions of the genome von Christensen, Kris A, Rondeau, Eric B, Minkley, David R, Sakhrani, Dionne, Biagi, Carlo A, Flores, Anne-Marie, Withler, Ruth E, Pavey, Scott A, Beacham, Terry D, Godin, Theresa, Taylor, Eric B, Russello, Michael A, Devlin, Robert H, Koop, Ben F

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Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome von Leong, Jong S, Jantzen, Stuart G, von Schalburg, Kristian R, Cooper, Glenn A, Messmer, Amber M, Liao, Nancy Y, Munro, Sarah, Moore, Richard, Holt, Robert A, Jones, Steven J M, Davidson, William S, Koop, Ben F

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Limited genetic parallelism underlies recent, repeated incipient speciation in geographically proximate populations of an Arctic fish (Salvelinus alpinus) von Salisbury, Sarah J., McCracken, Gregory R., Perry, Robert, Keefe, Donald, Layton, Kara K.S., Kess, Tony, Nugent, Cameron M., Leong, Jong S., Bradbury, Ian R., Koop, Ben F., Ferguson, Moira M., Ruzzante, Daniel E.

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A linkage map of the Atlantic salmon (Salmo salar) based on EST-derived SNP markers von Moen, Thomas, Hayes, Ben, Baranski, Matthew, Berg, Paul R, Kjøglum, Sissel, Koop, Ben F, Davidson, Willie S, Omholt, Stig W, Lien, Sigbjørn

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The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle von Christensen, Kris A, Rondeau, Eric B, Sakhrani, Dionne, Biagi, Carlo A, Johnson, Hollie, Joshi, Jay, Flores, Anne-Marie, Leelakumari, Sreeja, Moore, Richard, Pandoh, Pawan K, Withler, Ruth E, Beacham, Terry D, Leggatt, Rosalind A, Tarpey, Carolyn M, Seeb, Lisa W, Seeb, James E, Jones, Steven J M, Devlin, Robert H, Koop, Ben F

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Convergent geographic patterns between grizzly bear population genetic structure and Indigenous language groups in coastal British Columbia, Canada von Henson, Lauren H., Balkenhol, Niko, Gustas, Robert, Adams, Megan, Walkus, Jennifer, Housty, William G., Stronen, Astrid V., Moody, Jason, Service, Christina, Reece, Donald, vonHoldt, Bridgett M., McKechnie, Iain, Koop, Ben F., Darimont, Chris T.

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Standardized IMGT® Nomenclature of Salmonidae IGH Genes, the Paradigm of Atlantic Salmon and Rainbow Trout: From Genomics to Repertoires von Magadan, Susana, Krasnov, Aleksei, Hadi-Saljoqi, Saida, Afanasyev, Sergey, Mondot, Stanislas, Lallias, Delphine, Castro, Rosario, Salinas, Irene, Sunyer, Oriol, Hansen, John, Koop, Ben F, Lefranc, Marie-Paule, Boudinot, Pierre

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Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids von de Boer, Johan G, Yazawa, Ryosuke, Davidson, William S, Koop, Ben F

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Re‐evaluating Coho salmon (Oncorhynchus kisutch) conservation units in Canada using genomic data von Xuereb, Amanda, Rougemont, Quentin, Dallaire, Xavier, Moore, Jean‐Sébastien, Normandeau, Eric, Bougas, Bérénice, Perreault‐Payette, Alysse, Koop, Ben F., Withler, Ruth, Beacham, Terry, Bernatchez, Louis

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Transcriptional responses in a Drosophila defensive symbiosis von Hamilton, Phineas T, Leong, Jong S, Koop, Ben F, Perlman, Steve J

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Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene von Rondeau, Eric B, Messmer, Amber M, Sanderson, Dan S, Jantzen, Stuart G, von Schalburg, Kristian R, Minkley, David R, Leong, Jong S, Macdonald, Graham M, Davidsen, Amanda E, Parker, William A, Mazzola, Rosetta S A, Campbell, Briony, Koop, Ben F

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