Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample von Luo, Chengwei, Tsementzi, Despina, Kyrpides, Nikos, Read, Timothy, Konstantinidis, Konstantinos T

Volltext

Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics von Poretsky, Rachel, Rodriguez-R, Luis M, Luo, Chengwei, Tsementzi, Despina, Konstantinidis, Konstantinos T

Volltext

Uncultivated microbes in need of their own taxonomy von Konstantinidis, Konstantinos T, Rosselló-Móra, Ramon, Amann, Rudolf

Volltext

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries von Jain, Chirag, Rodriguez-R, Luis M., Phillippy, Adam M., Konstantinidis, Konstantinos T., Aluru, Srinivas

Volltext

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences von Luo, Chengwei, Rodriguez-R, Luis M., Konstantinidis, Konstantinos T.

Volltext

The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level von Rodriguez-R, Luis M, Gunturu, Santosh, Harvey, William T, Rosselló-Mora, Ramon, Tiedje, James M, Cole, James R, Konstantinidis, Konstantinos T

Volltext

Microbial species delineation using whole genome sequences von Varghese, Neha J, Mukherjee, Supratim, Ivanova, Natalia, Konstantinidis, Konstantinos T, Mavrommatis, Kostas, Kyrpides, Nikos C, Pati, Amrita

Volltext

Giant virus diversity and host interactions through global metagenomics von Schulz, Frederik, Roux, Simon, Paez-Espino, David, Jungbluth, Sean, Walsh, David A., Denef, Vincent J., McMahon, Katherine D., Konstantinidis, Konstantinos T., Eloe-Fadrosh, Emiley A., Kyrpides, Nikos C., Woyke, Tanja

Volltext

Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets von Rodriguez-R, Luis M, Konstantinidis, Konstantinos T

Volltext

MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes von Ruiz-Perez, Carlos A, Conrad, Roth E, Konstantinidis, Konstantinos T

Volltext

Sequence‐discrete species for prokaryotes and other microbes: A historical perspective and pending issues von Konstantinidis, Konstantinos T.

Volltext

GSearch: ultra-fast and scalable genome search by combining K-mer hashing with hierarchical navigable small world graphs von Zhao, Jianshu, Both, Jean Pierre, Rodriguez-R, Luis M, Konstantinidis, Konstantinos T

Volltext

Beyond denitrification: The role of microbial diversity in controlling nitrous oxide reduction and soil nitrous oxide emissions von Shan, Jun, Sanford, Robert A., Chee‐Sanford, Joanne, Ooi, Sean K., Löffler, Frank E., Konstantinidis, Konstantinos T., Yang, Wendy H.

Volltext

Estimating coverage in metagenomic data sets and why it matters von Rodriguez-R, Luis M, Konstantinidis, Konstantinos T

Volltext

Hidden Diversity within Common Protozoan Parasites as Revealed by a Novel Genomotyping Scheme von Seabolt, Matthew H, Konstantinidis, Konstantinos T, Roellig, Dawn M

Volltext

Bacterial species may exist, metagenomics reveal von Caro-Quintero, Alejandro, Konstantinidis, Konstantinos T.

Volltext

Genomic Insights That Advance the Species Definition for Prokaryotes von Konstantinidis, Konstantinos T., Tiedje, James M.

Volltext

Year-Round Shotgun Metagenomes Reveal Stable Microbial Communities in Agricultural Soils and Novel Ammonia Oxidizers Responding to Fertilization von Orellana, Luis H, Chee-Sanford, Joanne C, Sanford, Robert A, Löffler, Frank E, Konstantinidis, Konstantinos T

Volltext

Widely Used Benzalkonium Chloride Disinfectants Can Promote Antibiotic Resistance von Kim, Minjae, Weigand, Michael R, Oh, Seungdae, Hatt, Janet K, Krishnan, Raj, Tezel, Ulas, Pavlostathis, Spyros G, Konstantinidis, Konstantinos T

Volltext

Long-Term Exposure to Benzalkonium Chloride Disinfectants Results in Change of Microbial Community Structure and Increased Antimicrobial Resistance von Tandukar, Madan, Oh, Seungdae, Tezel, Ulas, Konstantinidis, Konstantinos T, Pavlostathis, Spyros G

Volltext