A transcriptomics data-driven gene space accurately predicts liver cytopathology and drug-induced liver injury von Kohonen, Pekka, Parkkinen, Juuso A., Willighagen, Egon L., Ceder, Rebecca, Wennerberg, Krister, Kaski, Samuel, Grafström, Roland C.

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Reply to: Prospects and challenges for FAIR toxicogenomics data von Grafström, Roland, Haase, Andrea, Kohonen, Pekka, Jeliazkova, Nina, Nymark, Penny

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Androgen regulation of micro-RNAs in prostate cancer von Waltering, Kati K., Porkka, Kati P., Jalava, Sanni E., Urbanucci, Alfonso, Kohonen, Pekka J., Latonen, Leena M., Kallioniemi, Olli P., Jenster, Guido, Visakorpi, Tapio

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A comprehensive panel of three-dimensional models for studies of prostate cancer growth, invasion and drug responses von Härmä, Ville, Virtanen, Johannes, Mäkelä, Rami, Happonen, Antti, Mpindi, John-Patrick, Knuuttila, Matias, Kohonen, Pekka, Lötjönen, Jyrki, Kallioniemi, Olli, Nees, Matthias

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Proteomics Analysis Reveals Distinct Corona Composition on Magnetic Nanoparticles with Different Surface Coatings: Implications for Interactions with Primary Human Macrophages von Vogt, Carmen, Pernemalm, Maria, Kohonen, Pekka, Laurent, Sophie, Hultenby, Kjell, Vahter, Marie, Lehtiö, Janne, Toprak, Muhammet S, Fadeel, Bengt

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Systematic Analysis of MicroRNAs Targeting the Androgen Receptor in Prostate Cancer Cells von STLING, Päivi Ö, LEIVONEN, Suvi-Katri, BJARTELL, Anders, CEDER, Yvonne, PERÄLÄ, Merja, KALLIONIEMI, Olli, AAKULA, Anna, KOHONEN, Pekka, MÄKELÄ, Rami, HAGMAN, Zandra, EDSJÖ, Anders, KANGASPESKA, Sara, EDGREN, Henrik, NICORICI, Daniel

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Macrophage sensing of single-walled carbon nanotubes via Toll-like receptors von Mukherjee, Sourav P., Bondarenko, Olesja, Kohonen, Pekka, Andón, Fernando T., Brzicová, Táňa, Gessner, Isabel, Mathur, Sanjay, Bottini, Massimo, Calligari, Paolo, Stella, Lorenzo, Kisin, Elena, Shvedova, Anna, Autio, Reija, Salminen-Mankonen, Heli, Lahesmaa, Riitta, Fadeel, Bengt

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Enhanced serine production by bone metastatic breast cancer cells stimulates osteoclastogenesis von Pollari, Sirkku, Käkönen, Sanna-Maria, Edgren, Henrik, Wolf, Maija, Kohonen, Pekka, Sara, Henri, Guise, Theresa, Nees, Matthias, Kallioniemi, Olli

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CIP2A oncoprotein controls cell growth and autophagy through mTORC1 activation von Puustinen, Pietri, Rytter, Anna, Mortensen, Monika, Kohonen, Pekka, Moreira, José M, Jäättelä, Marja

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High-Throughput Cell-Based Screening of 4910 Known Drugs and Drug-like Small Molecules Identifies Disulfiram as an Inhibitor of Prostate Cancer Cell Growth von IIJIN, Kristiina, KETOLA, Kirsi, VAINIO, Paula, HALONEN, Pasi, KOHONEN, Pekka, FEY, Vidal, GRAFSTRÖM, Roland C, PERÄLÄ, Merja, KALLIONIEMI, Olli

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Toxic and Genomic Influences of Inhaled Nanomaterials as a Basis for Predicting Adverse Outcome von Nymark, Penny, Kohonen, Pekka, Hongisto, Vesa, Grafström, Roland C

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ErbB2-Driven Breast Cancer Cell Invasion Depends on a Complex Signaling Network Activating Myeloid Zinc Finger-1-Dependent Cathepsin B Expression von Rafn, Bo, Nielsen, Christian Friberg, Andersen, Sofie Hagel, Szyniarowski, Piotr, Corcelle-Termeau, Elisabeth, Valo, Erkka, Fehrenbacher, Nicole, Olsen, Charlotta Johanne, Daugaard, Mads, Egebjerg, Christina, Bøttzauw, Trine, Kohonen, Pekka, Nylandsted, Jesper, Hautaniemi, Sampsa, Moreira, José, Jäättelä, Marja, Kallunki, Tuula

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Loss of Pax5 Promotes Plasma Cell Differentiation von Nera, Kalle-Pekka, Kohonen, Pekka, Narvi, Elli, Peippo, Anne, Mustonen, Laura, Terho, Perttu, Koskela, Kimmo, Buerstedde, Jean-Marie, Lassila, Olli

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Functional profiling of precursor MicroRNAs identifies MicroRNAs essential for glioma proliferation von Haapa-Paananen, Saija, Chen, Ping, Hellström, Kirsi, Kohonen, Pekka, Hautaniemi, Sampsa, Kallioniemi, Olli, Perälä, Merja

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Arachidonic Acid Pathway Members PLA2G7 , HPGD , EPHX2 , and CYP4F8 Identified as Putative Novel Therapeutic Targets in Prostate Cancer von Vainio, Paula, Gupta, Santosh, Ketola, Kirsi, Mirtti, Tuomas, Mpindi, John-Patrick, Kohonen, Pekka, Fey, Vidal, Perälä, Merja, Smit, Frank, Verhaegh, Gerald, Schalken, Jack, Alanen, Kalle A, Kallioniemi, Olli, Iljin, Kristiina

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Transcriptomics in Toxicogenomics, Part III: Data Modelling for Risk Assessment von Serra, Angela, Fratello, Michele, Cattelani, Luca, Liampa, Irene, Melagraki, Georgia, Kohonen, Pekka, Nymark, Penny, Federico, Antonio, Kinaret, Pia Anneli Sofia, Jagiello, Karolina, Ha, My Kieu, Choi, Jang-Sik, Sanabria, Natasha, Gulumian, Mary, Puzyn, Tomasz, Yoon, Tae-Hyun, Sarimveis, Haralambos, Grafström, Roland, Afantitis, Antreas, Greco, Dario

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Transcriptomics in Toxicogenomics, Part I: Experimental Design, Technologies, Publicly Available Data, and Regulatory Aspects von Kinaret, Pia Anneli Sofia, Serra, Angela, Federico, Antonio, Kohonen, Pekka, Nymark, Penny, Liampa, Irene, Ha, My Kieu, Choi, Jang-Sik, Jagiello, Karolina, Sanabria, Natasha, Melagraki, Georgia, Cattelani, Luca, Fratello, Michele, Sarimveis, Haralambos, Afantitis, Antreas, Yoon, Tae-Hyun, Gulumian, Mary, Grafström, Roland, Puzyn, Tomasz, Greco, Dario

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High-throughput transcriptomic and RNAi analysis identifies AIM1, ERGIC1, TMED3 and TPX2 as potential drug targets in prostate cancer von Vainio, Paula, Mpindi, John-Patrick, Kohonen, Pekka, Fey, Vidal, Mirtti, Tuomas, Alanen, Kalle A, Perälä, Merja, Kallioniemi, Olli, Iljin, Kristiina

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The eNanoMapper database for nanomaterial safety information von Jeliazkova, Nina, Chomenidis, Charalampos, Doganis, Philip, Fadeel, Bengt, Grafström, Roland, Hardy, Barry, Hastings, Janna, Hegi, Markus, Jeliazkov, Vedrin, Kochev, Nikolay, Kohonen, Pekka, Munteanu, Cristian R, Sarimveis, Haralambos, Smeets, Bart, Sopasakis, Pantelis, Tsiliki, Georgia, Vorgrimmler, David, Willighagen, Egon

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Meta‐Analysis of Integrated Proteomic and Transcriptomic Data Discerns Structure–Activity Relationship of Carbon Materials with Different Morphologies von Dumit, Verónica I., Liu, Yuk‐Chien, Bahl, Aileen, Kohonen, Pekka, Grafström, Roland C., Nymark, Penny, Müller‐Graf, Christine, Haase, Andrea, Pink, Mario

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