Decontamination of ambient RNA in single-cell RNA-seq with DecontX von Yang, Shiyi, Corbett, Sean E, Koga, Yusuke, Wang, Zhe, Johnson, W Evan, Yajima, Masanao, Campbell, Joshua D

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Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data von Hong, Rui, Koga, Yusuke, Bandyadka, Shruthi, Leshchyk, Anastasia, Wang, Yichen, Akavoor, Vidya, Cao, Xinyun, Sarfraz, Irzam, Wang, Zhe, Alabdullatif, Salam, Jansen, Frederick, Yajima, Masanao, Johnson, W. Evan, Campbell, Joshua D.

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Long-Term Whole-Body Vibration Stimulus Decreases Body Fat Accumulation in Rats Fed a High-Fat Diet von Higaki, Shunsuke, Koga, Yusuke, Inai, Reiko, Matsuo, Tatsuhiro

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Pipeliner: A Nextflow-Based Framework for the Definition of Sequencing Data Processing Pipelines von Federico, Anthony, Karagiannis, Tanya, Karri, Kritika, Kishore, Dileep, Koga, Yusuke, Campbell, Joshua D, Monti, Stefano

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Effect of long-term vibration stimulus on skeletal muscle mass and body composition in rats von Koga, Yusuke, Matsuo, Tatsuhiro

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Competitive Allele-Specific Hairpin Primer PCR for Extremely High Allele Discrimination in Typing of Single Nucleotide Polymorphisms von Takei, Fumie, Igarashi, Masako, Oka, Yoshimi, Koga, Yusuke, Nakatani, Kazuhiko

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Elevated T cell repertoire diversity is associated with progression of lung squamous cell premalignant lesions von Maoz, Asaf, Merenstein, Carter, Koga, Yusuke, Potter, Austin, Gower, Adam C, Liu, Gang, Zhang, Sherry, Liu, Hanqiao, Stevenson, Christopher, Spira, Avrum, Reid, Mary E, Campbell, Joshua D, Mazzilli, Sarah A, Lenburg, Marc E, Beane, Jennifer

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Association between reduction of plasma adiponectin levels and risk of bacterial infection after gastric cancer surgery von Yamamoto, Hiroshi, Maeda, Kazuhisa, Uji, Yoshitaka, Tsuchihashi, Hiroshi, Mori, Tsuyoshi, Shimizu, Tomoharu, Endo, Yoshihiro, Kadota, Aya, Miura, Katsuyuki, Koga, Yusuke, Ito, Toshinori, Tani, Tohru

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Whole-genome doubling confers unique genetic vulnerabilities on tumour cells von Quinton, Ryan J., DiDomizio, Amanda, Vittoria, Marc A., Kotýnková, Kristýna, Ticas, Carlos J., Patel, Sheena, Koga, Yusuke, Vakhshoorzadeh, Jasmine, Hermance, Nicole, Kuroda, Taruho S., Parulekar, Neha, Taylor, Alison M., Manning, Amity L., Campbell, Joshua D., Ganem, Neil J.

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Genomic Profiling of Prostate Cancers from Men with African and European Ancestry von Koga, Yusuke, Song, Hanbing, Chalmers, Zachary R, Newberg, Justin, Kim, Eejung, Carrot-Zhang, Jian, Piou, Daphnee, Polak, Paz, Abdulkadir, Sarki A, Ziv, Elad, Meyerson, Matthew, Frampton, Garrett M, Campbell, Joshua D, Huang, Franklin W

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Abstract D120: Similarities and differences between genomic profiles of prostate cancers from African American and European American men with implications for precision cancer medi... von Koga, Yusuke, Song, Hanbing, Chalmers, Zachary, Newberg, Justin, Frampton, Garrett, Campbell, Joshua, Huang, Franklin

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Abstract A122: Comparison of mutational profiles in primary prostate cancers between men with African and European ancestry von Kim, Eejung, Koga, Yusuke, Carrot-Zhang, Jian, Campbell, Joshua D., Huang, Franklin

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Abstract P075: Comparison of the tumor and lymph node immune microenvironment in early non-small cell lung cancer through multimodal single cell sequencing von Xi, Zhan, Koga, Yusuke, McDermott, Shannon, Beane, Jennifer E., Mazzilli, Sarah A., Suzuki, Kei, Campbell, Joshua D.

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Role of 14-3-3η protein on cardiac fatty acid metabolism and macrophage polarization after high fat diet induced type 2 diabetes mellitus von Sreedhar, Remya, Arumugam, Somasundaram, Thandavarayan, Rajarajan A., Karuppagounder, Vengadeshprabhu, Koga, Yusuke, Nakamura, Takashi, Harima, Meilei, Watanabe, Kenichi

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Abstract 171: Cloud-based bulk and single-cell RNAseq pipelines in the Terra platform for the Lung PCA von Husted, Chris, Aguet, François, Shea, Conor, Gower, Adam, Mischler, William, Koga, Yusuke, Hong, Rui, Dubinett, Steven, Spira, Avrum, Mazzilli, Sarah A., Cerami, Ethan, Leshchiner, Ignaty, Lenburg, Marc E., Getz, Gad, Beane, Jennifer E., Campbell, Joshua D.

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Abstract 4651: Comparison of the tumor and lymph node immune microenvironment in early non-small cell lung cancer through multimodal single cell sequencing von Xi, Zhanhao, Koga, Yusuke, McDermott, Shannon, Beane, Jennifer, Mazzilli, Sarah A., Suzuki, Kei, Campbell, Joshua D.

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Examining the genomic profiles of prostate cancers from men with African ancestry reveals implications for precision cancer medicine von Koga, Yusuke, Song, Hanbing, Chalmers, Zachary R., Newberg, Justin, Kim, Eejung, Carrot-Zhang, Jian, Piou, Daphnee, Polak, Paz, Abdulkadir, Sarki A., Ziv, Elad, Meyerson, Matthew, Frampton, Garrett M., Campbell, Joshua D., Huang, Franklin W.

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Publisher Correction: Whole-genome doubling confers unique genetic vulnerabilities on tumour cells von Quinton, Ryan J., DiDomizio, Amanda, Vittoria, Marc A., Kotýnková, Kristýna, Ticas, Carlos J., Patel, Sheena, Koga, Yusuke, Vakhshoorzadeh, Jasmine, Hermance, Nicole, Kuroda, Taruho S., Parulekar, Neha, Taylor, Alison M., Manning, Amity L., Campbell, Joshua D., Ganem, Neil J.

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Abstract 3393: Altered immune response in the transcriptome of patients with lung cancer von Hijazi, Kahkeshan, Lel, Julian, Billatos, Ehab, Moses, Elizabeth, Stevenson, Christopher S., Lorenzi, Matthew V., Liu, Gang, Campbell, Joshua D., Koga, Yusuke, Zhang, Jiarui, Duan, Fenghai, Marques, Helga, Lenburg, Marc E., Spira, Avrum E., Beane, Jennifer

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Celda: a Bayesian model to perform co-clustering of genes into modules and cells into subpopulations using single-cell RNA-seq data von Wang, Zhe, Yang, Shiyi, Koga, Yusuke, Corbett, Sean E, Shea, Conor V, Johnson, W Evan, Yajima, Masanao, Campbell, Joshua D

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