Maftools: efficient and comprehensive analysis of somatic variants in cancer von Mayakonda, Anand, Lin, De-Chen, Assenov, Yassen, Plass, Christoph, Koeffler, H Phillip

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Differentiation therapy of myeloid leukemia: four decades of development von Madan, Vikas, Koeffler, H Phillip

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Genomic and Epigenomic Aberrations in Esophageal Squamous Cell Carcinoma and Implications for Patients von Lin, De-Chen, Wang, Ming-Rong, Koeffler, H. Phillip

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Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas von Lin, De-Chen, Dinh, Huy Q, Xie, Jian-Jun, Mayakonda, Anand, Silva, Tiago Chedraoui, Jiang, Yan-Yi, Ding, Ling-Wen, He, Jian-Zhong, Xu, Xiu-E, Hao, Jia-Jie, Wang, Ming-Rong, Li, Chunquan, Xu, Li-Yan, Li, En-Min, Berman, Benjamin P, Phillip Koeffler, H

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Genomic and Epigenomic Heterogeneity of Hepatocellular Carcinoma von Lin, De-Chen, Mayakonda, Anand, Dinh, Huy Q, Huang, Pinbo, Lin, Lehang, Liu, Xiaoping, Ding, Ling-Wen, Wang, Jie, Berman, Benjamin P, Song, Er-Wei, Yin, Dong, Koeffler, H Phillip

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Core transcriptional regulatory circuitries in cancer von Chen, Ye, Xu, Liang, Lin, Ruby Yu-Tong, Müschen, Markus, Koeffler, H. Phillip

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Integrated single-cell transcriptome analysis reveals heterogeneity of esophageal squamous cell carcinoma microenvironment von Dinh, Huy Q., Pan, Feng, Wang, Geng, Huang, Qing-Feng, Olingy, Claire E., Wu, Zhi-Yong, Wang, Shao-Hong, Xu, Xin, Xu, Xiu-E, He, Jian-Zhong, Yang, Qian, Orsulic, Sandra, Haro, Marcela, Li, Li-Yan, Huang, Guo-Wei, Breunig, Joshua J., Koeffler, H. Phillip, Hedrick, Catherine C., Xu, Li-Yan, Lin, De-Chen, Li, En-Min

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miR-34a functions as a tumor suppressor modulating EGFR in glioblastoma multiforme von Yin, D, Ogawa, S, Kawamata, N, Leiter, A, Ham, M, Li, D, Doan, N B, Said, J W, Black, K L, Phillip Koeffler, H

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Super-Enhancers Promote Transcriptional Dysregulation in Nasopharyngeal Carcinoma von Yuan, Jiang, Jiang, Yan-Yi, Mayakonda, Anand, Huang, Moli, Ding, Ling-Wen, Lin, Han, Yu, Fenggang, Lu, Yanan, Loh, Thomas Kwok Seng, Chow, Marilynn, Savage, Samantha, Tyner, Jeffrey W, Lin, De-Chen, Koeffler, H Phillip

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Differentiation therapy of leukemia: 3 decades of development von Nowak, Daniel, Stewart, Daphne, Koeffler, H. Phillip

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SRSF2 mutations in 275 cases with chronic myelomonocytic leukemia (CMML) von Meggendorfer, Manja, Roller, Andreas, Haferlach, Torsten, Eder, Christiane, Dicker, Frank, Grossmann, Vera, Kohlmann, Alexander, Alpermann, Tamara, Yoshida, Kenichi, Ogawa, Seishi, Koeffler, H. Phillip, Kern, Wolfgang, Haferlach, Claudia, Schnittger, Susanne

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Interplay and cooperation between SREBF1 and master transcription factors regulate lipid metabolism and tumor-promoting pathways in squamous cancer von Li, Li-Yan, Yang, Qian, Jiang, Yan-Yi, Yang, Wei, Jiang, Yuan, Li, Xiang, Hazawa, Masaharu, Zhou, Bo, Huang, Guo-Wei, Xu, Xiu-E, Gery, Sigal, Zhang, Ying, Ding, Ling-Wen, Ho, Allen S., Zumsteg, Zachary S., Wang, Ming-Rong, Fullwood, Melissa J., Freedland, Stephen J., Meltzer, Stephen J., Xu, Li-Yan, Li, En-Min, Koeffler, H. Phillip, Lin, De-Chen

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Circular RNA MAPK4 (circ-MAPK4) inhibits cell apoptosis via MAPK signaling pathway by sponging miR-125a-3p in gliomas von He, Jiehua, Huang, Zuoyu, He, Mingliang, Liao, Jianyou, Zhang, Qianqian, Wang, Shengwen, Xie, Lin, Ouyang, Leping, Koeffler, H Phillip, Yin, Dong, Liu, Anmin

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Frequent pathway mutations of splicing machinery in myelodysplasia von Yoshida, Kenichi, Sanada, Masashi, Shiraishi, Yuichi, Nowak, Daniel, Nagata, Yasunobu, Yamamoto, Ryo, Sato, Yusuke, Sato-Otsubo, Aiko, Kon, Ayana, Nagasaki, Masao, Chalkidis, George, Suzuki, Yutaka, Shiosaka, Masashi, Kawahata, Ryoichiro, Yamaguchi, Tomoyuki, Otsu, Makoto, Obara, Naoshi, Sakata-Yanagimoto, Mamiko, Ishiyama, Ken, Mori, Hiraku, Nolte, Florian, Hofmann, Wolf-Karsten, Miyawaki, Shuichi, Sugano, Sumio, Haferlach, Claudia, Koeffler, H. Phillip, Shih, Lee-Yung, Haferlach, Torsten, Chiba, Shigeru, Nakauchi, Hiromitsu, Miyano, Satoru, Ogawa, Seishi

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A Transcriptional Regulatory Loop of Master Regulator Transcription Factors, PPARG, and Fatty Acid Synthesis Promotes Esophageal Adenocarcinoma von Ma, Sai, Zhou, Bo, Yang, Qian, Pan, Yunzhi, Yang, Wei, Freedland, Stephen J, Ding, Ling-Wen, Freeman, Michael R, Breunig, Joshua J, Bhowmick, Neil A, Pan, Jian, Koeffler, H Phillip, Lin, De-Chen

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Metabolic gatekeeper function of B-lymphoid transcription factors von Chan, Lai N., Chen, Zhengshan, Braas, Daniel, Lee, Jae-Woong, Xiao, Gang, Geng, Huimin, Cosgun, Kadriye Nehir, Hurtz, Christian, Shojaee, Seyedmehdi, Cazzaniga, Valeria, Schjerven, Hilde, Ernst, Thomas, Hochhaus, Andreas, Kornblau, Steven M., Konopleva, Marina, Pufall, Miles A., Cazzaniga, Giovanni, Liu, Grace J., Milne, Thomas A., Koeffler, H. Phillip, Ross, Theodora S., Sánchez-García, Isidro, Borkhardt, Arndt, Yamamoto, Keith R., Dickins, Ross A., Graeber, Thomas G., Müschen, Markus

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A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes von Zheng, Yueyuan, Huang, Guowei, Silva, Tiago C., Yang, Qian, Jiang, Yan-Yi, Koeffler, H. Phillip, Lin, De-Chen, Berman, Benjamin P.

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Multiple myeloma: Combination therapy of BET proteolysis targeting chimeric molecule with CDK9 inhibitor von Lim, Su-Lin, Xu, Liang, Han, Bing-Chen, Shyamsunder, Pavithra, Chng, Wee-Joo, Koeffler, H. Phillip

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Genomic and molecular characterization of esophageal squamous cell carcinoma von Lin, De-Chen, Hao, Jia-Jie, Nagata, Yasunobu, Xu, Liang, Shang, Li, Meng, Xuan, Sato, Yusuke, Okuno, Yusuke, Varela, Ana Maria, Ding, Ling-Wen, Garg, Manoj, Liu, Li-Zhen, Yang, Henry, Yin, Dong, Shi, Zhi-Zhou, Jiang, Yan-Yi, Gu, Wen-Yue, Gong, Ting, Zhang, Yu, Xu, Xin, Kalid, Ori, Shacham, Sharon, Ogawa, Seishi, Wang, Ming-Rong, Koeffler, H Phillip

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Lineage-specific epigenomic and genomic activation of oncogene HNF4A promotes gastrointestinal adenocarcinomas von Pan, Jian, Silva, Tiago C, Gull, Nicole, Yang, Qian, Plummer, Jasmine T, Chen, Stephanie, Daigo, Kenji, Hamakubo, Takao, Gery, Sigal, Ding, Ling-Wen, Jiang, Yan-Yi, Hu, Shaoyan, Xu, Li-Yan, Li, En-Min, Ding, Yanbing, Klempner, Samuel J, Gayther, Simon A, Berman, Benjamin P, Koeffler, H Phillip, Lin, De-Chen

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